miRBase entry: aof-MIR2275b

Stem-loop aof-MIR2275b

Accession

MI0040587

Description

Asparagus officinalis aof-MIR2275b precursor miRNA

Literature search

1 open access papers mention aof-MIR2275b
(1 sentences)

Sequence

uuaacucuuggagcaugcaauuuugUCUGGUUUCCUCCAAUAUCUCAccuucaacugcucaacuauuugcauaaucaagaauauaaauuguguguggugguauugaaugugagaauugguggaaacugaacuuguaugucugcuaauauugguauua
.......(((((((((((((....((.((((((((.(((((.((((((.(((((.((((..(((((..(((((((...........))))))))))))))))))))).))))))))))).)))))))).))))))))).)).))))...........

Structure

----uuaacuc    -  -       uuuu  C        U     A      c     c    ca     uu       caag 
           uugg ag caugcaa    gU UGGUUUCC CCAAU UCUCAc uucaa ugcu  acuau  gcauaau    a
           |||| || |||||||    || |||||||| ||||| |||||| ||||| ||||  |||||  |||||||    a
           aauc uc guauguu    ca gucaaagg gguua agagug aaguu augg  uggug  uguguua    u
auuaugguuau    g  u       ----  a        u     -      u     -    --     --       aaua

Annotation confidence Not enough data

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Genome context

chr4: 142461369-142461525 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR2275b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aof-miR2275b

Accession	MIMAT0049793
Description	Asparagus officinalis aof-miR2275b mature miRNA
Sequence	26 - UCUGGUUUCCUCCAAUAUCUCA - 47
Evidence	experimental Illumina [1]

References

PubMed ID: 29093472
The asparagus genome sheds light on the origin and evolution of a young Y chromosome
Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
Nat Commun (2017) 8:1279