miRBase entry: aof-MIR2275c

Stem-loop aof-MIR2275c


Accession
MI0040588
Description
Asparagus officinalis aof-MIR2275c precursor miRNA


Sequence

ugcaauuuugUUUGAUUUCCUCCAAUAUCUCAcuuucaacugcucaauuguuccauuaucaagaacucauauuaugcgcgaugguauugaaugugagaauugggggaaagugaagcuaugcau
((((.....((((.((((((((((((.((((((.(((((.((((..(((((..(((.................))).)))))))))))))).)))))))))))))).)))).))))..)))).

Structure
-    auuuu    G    -        A      u     c    ca     uc   uaucaag 
 ugca     gUUU AUUU CCUCCAAU UCUCAc uucaa ugcu  auugu  cau       a
 ||||     |||| |||| |||||||| |||||| ||||| ||||  |||||  |||       a
 acgu     cgaa ugaa ggggguua agagug aaguu augg  uagcg  gua       c
u    ---au    g    a        -      u     -    --     -c   uuauacu 


Annotation confidence Not enough data
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Genome context
chr4: 142464985-142465107 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aof-MIR2275c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aof-miR2275c

Accession MIMAT0049794
Description Asparagus officinalis aof-miR2275c mature miRNA
Sequence 11 - UUUGAUUUCCUCCAAUAUCUCA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279