miRBase entry: aof-MIR319a

Stem-loop aof-MIR319a


Accession
MI0040589
Description
Asparagus officinalis aof-MIR319a precursor miRNA

Literature search
2 open access papers mention aof-MIR319a
(2 sentences)

Sequence

gaauaggauccccugaagagagcuuccuucaguccacucaugggcagcuguaggguugaauuagcugcugacucauucauucaaauacuaagucagagaaagagacuugguagaugagugaaugaugcaggagauaaaguuagacucuaugcggucuuugcUUGGACUGAAGGGAGCUCCCUucgucuauag
....(((....)))((((.(((((((((((((((((..((.((((.((.((((((((.((((..((.(((..(((((((((((..(((((((((.........)))))))))..)))))))))))..))).))....)))).)))))))))).)))).))..))))))))))))))))).))))........

Structure
gaauaggauccccu    a                 cu  u    a  u        g    --ag  g   ac           aa         aga 
              gaag gagcuuccuucagucca  ca gggc gc guaggguu aauu    cu cug  ucauucauuca  uacuaaguc   g
              |||| |||||||||||||||||  || |||| || |||||||| ||||    || |||  |||||||||||  |||||||||   a
              cuUC CUCGAGGGAAGUCAGGU  gu ucug cg uaucucag uuga    ga gac  aguaagugagu  augguucag   a
------gauaucug    C                 Uc  u    g  -        a    aaua  g   gu           ag         aga 


Annotation confidence Not enough data
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Genome context
chr5: 113982298-113982489 [+]

Database links

Mature aof-miR319a

Accession MIMAT0049795
Description Asparagus officinalis aof-miR319a mature miRNA
Sequence 162 - UUGGACUGAAGGGAGCUCCCU - 182
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279