Stem-loop aof-MIR390

Accession

MI0040591

Description

Asparagus officinalis aof-MIR390 precursor miRNA

Literature search

1 open access papers mention aof-MIR390
(1 sentences)

Sequence

ccauggcuugaacccuuugcucauuucccuucuagcucauucucuucuauuuucucuccauauauuucucucaaaaucggaggaaaauaaagaaaaaagugugaaagaauccuuaAAGCUCAGGAGGGAUAGCGCCauucaucaug
.(((((..((((.....((((....((((((((((((.(((((.(((((((((.(((...(((.(((((((.......))))))).))).)))..)))))).))))))))......)))).)))))))).))))...)))))))))

Structure

c     cu    cccuu    cauu        -    -----c     c   -      -c   cca   a       ca 
 caugg  ugaa     ugcu    ucccuucu agcu      auucu uuc uauuuu  ucu   uau uuucucu  a
 |||||  ||||     ||||    |||||||| ||||      ||||| ||| ||||||  |||   ||| |||||||  a
 guacu  acuu     GCGA    AGGGAGGA UCGA      uaaga aag gugaaa  aga   aua aaggagg  a
-     --    --aCC    ---U        C    Aauucc     -   u      aa   --a   a       cu 

Annotation confidence Not enough data

Genome context

chr8: 127059778-127059923 [-]

Mature aof-miR390

• Accession: MIMAT0049797
• Description: Asparagus officinalis aof-miR390 mature miRNA
• Sequence: 116 - AAGCUCAGGAGGGAUAGCGCC - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279