miRBase entry: aof-MIR395a

Stem-loop aof-MIR395a


Accession
MI0040595
Description
Asparagus officinalis aof-MIR395a precursor miRNA


Sequence

uguugcuuauccccgggaguucccucaaacacuuuguuauauaacucaaucucucugauacaagggagguaguauucuacUGAAGUGUUUGGGGGAACUCUggaugguaau
.((((((.((((...((((((((((((((((((((((...(((.((..((((((((......)))))))))))))...)).))))))))))))))))))))))))))))))

Structure
u      u    ccg                    -  uau   a  ca        ga 
 guugcu aucc   ggaguucccucaaacacuuu gu   aua cu  aucucucu  u
 |||||| ||||   |||||||||||||||||||| ||   ||| ||  ||||||||   
 uaaugg uagg   UCUCAAGGGGGUUUGUGAAG ca   uau ga  uggaggga  a
-      -    ---                    U  ucu   -  --        ac 


Annotation confidence Not enough data
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Genome context
chr8: 417909-418019 [+]

Database links

Mature aof-miR395a

Accession MIMAT0049801
Description Asparagus officinalis aof-miR395a mature miRNA
Sequence 81 - UGAAGUGUUUGGGGGAACUCU - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279