miRBase entry: aof-MIR395b

Stem-loop aof-MIR395b


Accession
MI0040596
Description
Asparagus officinalis aof-MIR395b precursor miRNA


Sequence

guuguccucuggaguucccucagacacuucacuaaagauaucugaaguauugaggacguuucgucucuaAUGAAGUGUAUGGGGGAACUCuggcgggcaa
.((((((.((((((((((((((.((((((((((..((....))..)))((((.(((((...))))).))))))))))).)))))))))))))).))))))

Structure
g      u              g       acuaaagauaucugaagu    a     u 
 uugucc cuggaguucccuca acacuuc                  auug ggacg  
 |||||| |||||||||||||| |||||||                  |||| ||||| u
 aacggg gguCUCAAGGGGGU UGUGAAG                  UAau ucugc  
-      c              A       ------------------    c     u 


Annotation confidence Not enough data
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Genome context
chr7: 142801792-142801891 [+]

Database links

Mature aof-miR395b

Accession MIMAT0049802
Description Asparagus officinalis aof-miR395b mature miRNA
Sequence 70 - AUGAAGUGUAUGGGGGAACUC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279