miRBase entry: aof-MIR479

Stem-loop aof-MIR479


Accession
MI0040605
Description
Asparagus officinalis aof-MIR479 precursor miRNA


Sequence

gaagaagaagaagagggcgacauggugugauguugguucggcucauuuuuuuaauuuuaugaagauagaaaUGAGCCGAACCAAUAUCACUCauguauucuucauucgagcaugcac
.........((((((((..((((((.((((((((((((((((((((((((................))))))))))))))))))))))))))))))..))))).)))..........

Structure
-gaagaagaa   -     cg      u                        uuaauuu 
          gaa gaggg  acaugg gugauguugguucggcucauuuuu       u
          ||| |||||  |||||| ||||||||||||||||||||||||        
          cuu cuucu  uguaCU CACUAUAACCAAGCCGAGUaaaga       a
cacguacgag   a     ua      -                        uagaagu 


Annotation confidence Not enough data
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Genome context
chr4: 140099175-140099291 [+]

Database links

Mature aof-miR479

Accession MIMAT0049811
Description Asparagus officinalis aof-miR479 mature miRNA
Sequence 72 - UGAGCCGAACCAAUAUCACUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279