miRBase entry: aof-MIR482b

Stem-loop aof-MIR482b


Accession
MI0040607
Description
Asparagus officinalis aof-MIR482b precursor miRNA

Literature search
1 open access papers mention aof-MIR482b
(3 sentences)

Sequence

gaggacuagauuguuagguguuauuggauuggguuaggauuggaaaaaucuuaugaauccaaguauuuUUUCCAAAACCUCCCAUUCCGAugauuucuaacuggcuagcccucuc
((((.((((...((((((.(((((((((.((((..(((.(((((((((.(((........)))...)))))))))..))))))).))))))))).))))))...)))).))))..

Structure
--    a    auu      u         u    uu   -a         --u   aug 
  gagg cuag   guuagg guuauugga uggg  agg  uuggaaaaa   cuu   a
  |||| ||||   |||||| ||||||||| ||||  |||  |||||||||   |||    
  cucc gauc   caaucu uaguAGCCU ACCC  UCC  AACCUUUuu   gaa   a
cu    c    ggu      u         U    --   AA         uau   ccu 


Annotation confidence Not enough data
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Genome context
chr4: 19025448-19025562 [-]

Database links

Mature aof-miR482b

Accession MIMAT0049813
Description Asparagus officinalis aof-miR482b mature miRNA
Sequence 69 - UUUCCAAAACCUCCCAUUCCGA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279