miRBase entry: aof-MIR828

Stem-loop aof-MIR828


Accession
MI0040614
Description
Asparagus officinalis aof-MIR828 precursor miRNA


Sequence

ugggaaggcuUCUUGCUUAGAUGAGUGUUCCUgcucggaaaacacacuagacuuuguuaauguugaacguaaaugaguuagagcacucauuugggcaagaagucuuccaa
..((((((((((((((((((((((((((((..(((((...((((.((........))...)))).........)))))..))))))))))))))))))))))))))))..

Structure
ug                            CU     ------gaa    --c  uag 
  ggaaggcuUCUUGCUUAGAUGAGUGUUC  gcucg         aaca   ac   a
  ||||||||||||||||||||||||||||  |||||         ||||   ||    
  ccuucugaagaacggguuuacucacgag  ugagu         uugu   ug   c
aa                            au     aaaugcaag    aau  uuu 


Annotation confidence Not enough data
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Genome context
chr4: 130243479-130243588 [-]

Database links

Mature aof-miR828

Accession MIMAT0049820
Description Asparagus officinalis aof-miR828 mature miRNA
Sequence 11 - UCUUGCUUAGAUGAGUGUUCCU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29093472
    The asparagus genome sheds light on the origin and evolution of a young Y chromosome
    Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
    Nat Commun (2017) 8:1279