Stem-loop sequence mmu-mir-9b-2

Accession

MI0040624 (change log)

Description

Mus musculus miR-9b-2 stem-loop

Literature search

208 open access papers mention mmu-mir-9b-2
(1070 sentences)

Stem-loop

   --uuc            u     agacc 
5'      gguuaucuagcu uauga     a
        |||||||||||| |||||      
3'      ccaauagaucga auacu     a
   agaaa            c     cacau 

Deep sequencing

3544 reads, 24 reads per million, 25 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 83738821-83738876 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-9b-2

• mmu-mir-9b-2: chr13: 83738821-83738876 [-]
• mmu-mir-9-2: chr13: 83738814-83738885 [+]

Database links

• miRBase Tracker:MI0040624

Mature sequence mmu-miR-9b-5p

• Accession: MIMAT0049835
• Sequence: 1 - uucgguuaucuagcuuuauga - 21
• Deep sequencing: 8374 reads, 22 experiments
• Evidence: experimental; Illumina [1]

Mature sequence mmu-miR-9b-3p

• Accession: MIMAT0049836
• Sequence: 36 - auacagcuagauaaccaaaga - 56
• Deep sequencing: 2175 reads, 20 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).