miRBase entry: gga-mir-9b-1

Stem-loop gga-mir-9b-1


Accession
MI0040667
Description
Gallus gallus gga-mir-9b-1 precursor miRNA

Literature search
19 open access papers mention gga-mir-9b-1
(347 sentences)

Sequence

125189 reads, 1 reads per million, 5 experiments
UUCGGUUAUCUAGCUUUAUGAuggcuccacaacacucAUACAGCUAGAUAACCAAAG
...((((((((((((.(((((((.........)).))))).))))))))))))....

Structure
-UUC            U     -  gcu 
    GGUUAUCUAGCU UAUGA ug   c
    |||||||||||| ||||| ||   c
    CCAAUAGAUCGA AUAcu ac   a
GAAA            C     c  aac 


Annotation confidence Not enough data
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Genome context
chr10: 12934137-12934193 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-9b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-9b-5p

Accession MIMAT0049903
Description Gallus gallus gga-miR-9b-5p mature miRNA
Sequence 1 - UUCGGUUAUCUAGCUUUAUGA - 21
Evidence experimental
Illumina [1]

Mature gga-miR-9b-3p

Accession MIMAT0049904
Description Gallus gallus gga-miR-9b-3p mature miRNA
Sequence 38 - AUACAGCUAGAUAACCAAAG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973