miRBase entry: gga-mir-12221-2

Stem-loop gga-mir-12221-2


Accession
MI0040674
Description
Gallus gallus gga-mir-12221-2 precursor miRNA


Sequence

158 reads, 8 reads per million, 5 experiments
aGCGGACAAAGGACGAUGGCACacgaagugcucuggaggccugugacaguucaugUGCCAUCGUCCUUUGUCCGCUGcu
(((((((((((((((((((((((.(((.(((.(.((...)).).).)).))).)))))))))))))))))))))))...

Structure
---                       c   g  - u u  a 
   aGCGGACAAAGGACGAUGGCACa gaa ug c c gg  
   ||||||||||||||||||||||| ||| || | | || g
   UCGCCUGUUUCCUGCUACCGUgu cuu ac g g cc  
ucG                       a   g  a u u  g 


Annotation confidence Not enough data
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Genome context
chr12: 5317530-5317608 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-12221-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-12221-5p

Accession MIMAT0049914
Description Gallus gallus gga-miR-12221-5p mature miRNA
Sequence 2 - GCGGACAAAGGACGAUGGCAC - 22
Evidence experimental
Illumina [1]

Mature gga-miR-12221-2-3p

Accession MIMAT0049916
Description Gallus gallus gga-miR-12221-2-3p mature miRNA
Sequence 56 - UGCCAUCGUCCUUUGUCCGCUG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973