miRBase entry: gga-mir-205c

Stem-loop gga-mir-205c

Accession

MI0040717

Description

Gallus gallus gga-mir-205c precursor miRNA

Literature search

2 open access papers mention gga-mir-205c
(2 sentences)

Sequence

4818 reads, 5.0 reads per million, 140 experiments

GCUUCACUCCACUGAAAUCUGGuuagguacgagacaGACUCCGGUGGAAUGAAGGACA
.(((((.(((((((...((((.............))))...))))))).)))))....

Structure

---G     C       AAA    Guuag 
    CUUCA UCCACUG   UCUG     g
    ||||| |||||||   ||||     u
    GAAGU AGGUGGC   AGac     a
ACAG     A       CUC    agagc

Annotation confidence High

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Genome context

26: 3112098-3112155 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-205c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gga-miR-205c-5p

Accession	MIMAT0049995
Description	Gallus gallus gga-miR-205c-5p mature miRNA
Sequence	1 - GCUUCACUCCACUGAAAUCUGG - 22
Evidence	experimental Illumina [1]

Mature gga-miR-205c-3p

Accession	MIMAT0049996
Description	Gallus gallus gga-miR-205c-3p mature miRNA
Sequence	37 - GACUCCGGUGGAAUGAAGGACA - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 29079676
Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
"Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
Genome Res (2017) 12:1961-1973