miRBase entry: mdo-mir-12301

Stem-loop mdo-mir-12301


Accession
MI0040790
Description
Monodelphis domestica mdo-mir-12301 precursor miRNA


Sequence

29878 reads, 594 reads per million, 5 experiments
uUACAGAUUGGGAAACUGAGGUGugguaaaucuguuuaCCUCGGUCUCCAUAAUCUGUAAagg
(((((((((((((.(((((((((.((.....))...))))))))).))).))))))))))...

Structure
---          -   A         --u  u 
   uUACAGAUUG GGA ACUGAGGUG   gg a
   |||||||||| ||| |||||||||   || a
   AAUGUCUAAU CCU UGGCUCCau   uc a
gga          A   C         uug  u 


Annotation confidence High
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Genome context
chr1: 366803975-366804037 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-12301
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-12301-5p

Accession MIMAT0050114
Description Monodelphis domestica mdo-miR-12301-5p mature miRNA
Sequence 2 - UACAGAUUGGGAAACUGAGGUG - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-12301-3p

Accession MIMAT0050115
Description Monodelphis domestica mdo-miR-12301-3p mature miRNA
Sequence 39 - CCUCGGUCUCCAUAAUCUGUAA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973