miRBase entry: mdo-mir-1546b

Stem-loop mdo-mir-1546b


Accession
MI0040860
Description
Monodelphis domestica mdo-mir-1546b precursor miRNA


Sequence

129865 reads, 74 reads per million, 5 experiments
UAGGGAUUCUGAGAGGUGGAAGguauuuugucucacuUCCAUCCCUGAGAAUCCCUGAUu
((((((((((.((.((((((((.............)))))))).)).))))))))))...

Structure
---          G  A        guauu 
   UAGGGAUUCU AG GGUGGAAG     u
   |||||||||| || ||||||||     u
   GUCCCUAAGA UC CUACCUuc     g
uUA          G  C        acucu 


Annotation confidence Not enough data
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Genome context
chr3: 518067388-518067447 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-1546b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1546b-5p

Accession MIMAT0050235
Description Monodelphis domestica mdo-miR-1546b-5p mature miRNA
Sequence 1 - UAGGGAUUCUGAGAGGUGGAAG - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-1546b-3p

Accession MIMAT0050236
Description Monodelphis domestica mdo-miR-1546b-3p mature miRNA
Sequence 38 - UCCAUCCCUGAGAAUCCCUGAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973