miRBase entry: mdo-mir-551c

Stem-loop mdo-mir-551c


Accession
MI0040921
Description
Monodelphis domestica mdo-mir-551c precursor miRNA


Sequence

186 reads, 1 reads per million, 2 experiments
UGAAACCAAGUAUGGGUCGCCUuucaguuugcacacgaggUCUCACCCAUCCUUGAUUUCUGG
.((((.((((.((((((.(((((...((....))..)))))...)))))).)))).))))...

Structure
--U    C    U      --C     uca  u 
   GAAA CAAG AUGGGU   GCCUu   gu u
   |||| |||| ||||||   |||||   ||  
   CUUU GUUC UACCCA   Uggag   ca g
GGU    A    C      CUC     -ca  c 


Annotation confidence Not enough data
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Genome context
chr7: 234027695-234027757 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-551c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-551c-5p

Accession MIMAT0050340
Description Monodelphis domestica mdo-miR-551c-5p mature miRNA
Sequence 1 - UGAAACCAAGUAUGGGUCGCCU - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-551c-3p

Accession MIMAT0050341
Description Monodelphis domestica mdo-miR-551c-3p mature miRNA
Sequence 41 - UCUCACCCAUCCUUGAUUUCUGG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973