miRBase entry: mdo-mir-1544g

Stem-loop mdo-mir-1544g


Accession
MI0040956
Description
Monodelphis domestica mdo-mir-1544g precursor miRNA


Sequence

25674 reads, 453 reads per million, 5 experiments
UGCACCGAGGGAUAGAAUAGCGGuccacuuggcagcccACUUUUCUAUCCCUGGGACUGG
....((.((((((((((.((.(((((....))..)))..)).)))))))))).)).....

Structure
-UGCA  G          U  -C   --  a 
     CC AGGGAUAGAA AG  GGu  cc c
     || |||||||||| ||  |||  ||  
     GG UCCCUAUCUU UC  ccg  gg u
GGUCA  G          U  Ac   ac  u 


Annotation confidence Not enough data
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Genome context
chrX: 13994231-13994290 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mdo-mir-1544g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1544g-5p

Accession MIMAT0050397
Description Monodelphis domestica mdo-miR-1544g-5p mature miRNA
Sequence 1 - UGCACCGAGGGAUAGAAUAGCGG - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-1544g-3p

Accession MIMAT0050398
Description Monodelphis domestica mdo-miR-1544g-3p mature miRNA
Sequence 39 - ACUUUUCUAUCCCUGGGACUGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973