miRBase entry: smc-mir-12456

Stem-loop smc-mir-12456


Accession
MI0041064
Description
Symbiodinium microadriaticum smc-mir-12456 precursor miRNA


Sequence

CCUCGUCGUCUGCUCUUUGAGCugugcucgcagcucuugugaaucacaggcacggugcgccgcccagcUCAGAGACCAGACGCAGAGGCU
((((..((((((.(((((((((((.((.((((.(.((((((...))))))...).))))..)).))))))))))).))))))..))))..

Structure
--    GU      C           u  -u    g --u      a 
  CCUC  CGUCUG UCUUUGAGCug gc  cgca c   cuugug  
  ||||  |||||| ||||||||||| ||  |||| |   |||||| a
  GGAG  GCAGAC AGAGACUcgac cg  gcgu g   ggacac  
UC    AC      C           c  cc    g cac      u 


Annotation confidence Not enough data
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Genome context
LSRX01000794.1: 143940-144029 [+]

Database links

Mature smc-miR-12456-5p

Accession MIMAT0050476
Description Symbiodinium microadriaticum smc-miR-12456-5p mature miRNA
Sequence 1 - CCUCGUCGUCUGCUCUUUGAGC - 22
Evidence experimental
Illumina [1]

Mature smc-miR-12456-3p

Accession MIMAT0050477
Description Symbiodinium microadriaticum smc-miR-12456-3p mature miRNA
Sequence 69 - UCAGAGACCAGACGCAGAGGCU - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119094
    Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
    "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
    "BMC Genomics (2013) 14:704