miRBase entry: smc-mir-12455-2

Stem-loop smc-mir-12455-2


Accession
MI0041066
Description
Symbiodinium microadriaticum smc-mir-12455-2 precursor miRNA


Sequence

CUGUGACCGUCCCAUCCUUGCGgaucagcucccgucgucugucgucagagugcgggaguccaaccgCAAGGAUGGGAUGGUCAGAGAA
((.((((((((((((((((((((....((((((((..((((....))))..))))))))....)))))))))))))))))))).))..

Structure
--  G                    auca        cg    u 
  CU UGACCGUCCCAUCCUUGCGg    gcucccgu  ucug c
  || ||||||||||||||||||||    ||||||||  ||||  
  GA ACUGGUAGGGUAGGAACgcc    ugagggcg  agac g
AA  G                    aacc        ug    u 


Annotation confidence Not enough data
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Genome context
LSRX01000078.1: 519858-519945 [-]

Database links

Mature smc-miR-12455-5p

Accession MIMAT0050474
Description Symbiodinium microadriaticum smc-miR-12455-5p mature miRNA
Sequence 1 - CUGUGACCGUCCCAUCCUUGCG - 22
Evidence experimental
Illumina [1]

Mature smc-miR-12455-2-3p

Accession MIMAT0050480
Description Symbiodinium microadriaticum smc-miR-12455-2-3p mature miRNA
Sequence 67 - CAAGGAUGGGAUGGUCAGAGAA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119094
    Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
    "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
    "BMC Genomics (2013) 14:704