miRBase entry: smc-mir-12461

Stem-loop smc-mir-12461


Accession
MI0041070
Description
Symbiodinium microadriaticum smc-mir-12461 precursor miRNA


Sequence

GAGGAUGCUGAUCAUUCACUGGcccccuguggacacguguguugcacauguguccacagggggccAGUAAAUGAUCAGCAUCCUCCA
((((((((((((((((.((((((((((((((((((((((((...)))))))))))))))))))))))).))))))))))))))))..

Structure
--                C                        u 
  GAGGAUGCUGAUCAUU ACUGGcccccuguggacacgugug  
  |||||||||||||||| |||||||||||||||||||||||| u
  CUCCUACGACUAGUAA UGAccgggggacaccuguguacac  
AC                A                        g 


Annotation confidence Not enough data
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Genome context
LSRX01000225.1: 757723-757809 [-]

Database links

Mature smc-miR-12461-5p

Accession MIMAT0050487
Description Symbiodinium microadriaticum smc-miR-12461-5p mature miRNA
Sequence 1 - GAGGAUGCUGAUCAUUCACUGG - 22
Evidence experimental
Illumina [1]

Mature smc-miR-12461-3p

Accession MIMAT0050488
Description Symbiodinium microadriaticum smc-miR-12461-3p mature miRNA
Sequence 66 - AGUAAAUGAUCAGCAUCCUCCA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119094
    Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
    "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
    "BMC Genomics (2013) 14:704