Stem-loop sequence dme-mir-312

Accession

MI0000424 (change log)

Description

Drosophila melanogaster miR-312 stem-loop

Gene family

MIPF0000573; mir-312

Literature search

10 open access papers mention dme-mir-312
(59 sentences)

Stem-loop

       u   u    a    g     u   cauu 
5' gauu ggu cguc caag gcaau cug    u
   |||| ||| |||| |||| ||||| |||    u
3' uuag ccg gcag guuc cguua gau    u
       u   -    a    a     u   caau 

Deep sequencing

535989 reads, 3.71e+03 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 20584056-20584121 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dme-mir-312

• dme-mir-992: chr2R: 20585314-20585405 [-]
• dme-mir-991: chr2R: 20585200-20585295 [-]
• dme-mir-2498: chr2R: 20584709-20584820 [-]
• dme-mir-313: chr2R: 20584190-20584260 [-]
• dme-mir-312: chr2R: 20584056-20584121 [-]
• dme-mir-311: chr2R: 20583877-20583960 [-]
• dme-mir-310: chr2R: 20583752-20583840 [-]

Database links

• RNAcentral:URS00001266DB_7227
• miRBase Tracker:MI0000424

Mature sequence dme-miR-312-5p

• Accession: MIMAT0020838
• Sequence: 5 - ugguucgucacaagggcaauucu - 27
• Deep sequencing: 3768 reads, 41 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000519265_7227

Mature sequence dme-miR-312-3p

• Accession: MIMAT0000404
• Previous IDs: dme-miR-312
• Sequence: 43 - uauugcacuugagacggccuga - 64
• Deep sequencing: 532219 reads, 49 experiments
• Evidence: experimental; cloned [1], Northern [1], 454 [2-3], Illumina [3]
• Database links:
  • RNAcentral:URS0000018883_7227
• Predicted targets:
  • TargetScanFly:dme-miR-312
  • microrna.org:dme-miR-312-3p

References

1. PMID:12919683 "The small RNA profile during Drosophila melanogaster development" Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T Dev Cell. 5:337-350(2003).
2. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
3. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).