Stem-loop sequence ppy-mir-143

AccessionMI0002551 (change log)
DescriptionPongo pygmaeus miR-143 stem-loop
Gene family MIPF0000094; mir-143
Stem-loop
   -gc    c  ccug    c ag      g         g      u  -  ag 
5'    gcag gc    ucuc c  ccugag ugcagugcu caucuc gg uc  u
      |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
3'    cguc ug    agag g  ggacuc augucacga guagag cu ag  u
   cga    u  uuga    a aa      g         a      u  g  gg 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chr5: 151351266-151351371 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-143
ppy-mir-143chr5: 151351266-151351371 [+]
ppy-mir-145chr5: 151352993-151353080 [+]
Database links

Mature sequence ppy-miR-143

Accession MIMAT0002259
Sequence

61 - 

ugagaugaagcacuguagcuca

 - 82

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Evidence by similarity; MI0000459

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).