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miRBase |
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Stem-loop sequence rno-mir-124-3 |
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Accession | MI0000892 (change log) | ||||
Previous IDs | rno-mir-124a-3 | ||||
Description | Rattus norvegicus miR-124-3 stem-loop | ||||
Gene family | MIPF0000021; mir-124 | ||||
Literature search |
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86 open access papers mention rno-mir-124-3 | ||||
Stem-loop |
u - c - c a ga uaaug 5' gagg gcc cucu g guguucac gcg ccuugauu u |||| ||| |||| | |||||||| ||| |||||||| 3' cucc cgg gaga c cguaagug cgc ggaauuaa c c g a a - g ac cauau |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Database links |
Mature sequence rno-miR-124-5p |
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Accession | MIMAT0004728 |
Previous IDs | rno-miR-124* |
Sequence |
15 - cguguucacagcggaccuugau - 36 |
Deep sequencing | 29153 reads, 132 experiments |
Evidence | experimental; cloned [3], SOLiD [4] |
Predicted targets |
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Mature sequence rno-miR-124-3p |
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Accession | MIMAT0000828 |
Previous IDs | rno-miR-124a;rno-miR-124 |
Sequence |
53 - uaaggcacgcggugaaugcc - 72 |
Deep sequencing | 3743265 reads, 376 experiments |
Evidence | experimental; cloned [1-3], Northern [1], SOLiD [4] |
Predicted targets |
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References |
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1 |
PMID:14691248
"Identification of many microRNAs that copurify with polyribosomes in mammalian neurons"
Proc Natl Acad Sci U S A. 101:360-365(2004).
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2 |
PMID:15345052
"Microarray analysis of microRNA expression in the developing mammalian brain"
Genome Biol. 5:R68(2004).
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3 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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4 |
PMID:20403161
"Small RNA expression and strain specificity in the rat"
BMC Genomics. 11:249(2010).
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