Stem-loop sequence hsa-mir-1301

Accession

MI0003815 (change log)

Symbol

HGNC:MIR1301

Description

Homo sapiens miR-1301 stem-loop

Gene family

MIPF0000742; mir-1301

Literature search

10 open access papers mention hsa-mir-1301
(16 sentences)

Stem-loop

   --        g           -     - c      -  gu 
5'   ggauugug ggggucgcucu aggca c gcagca cu  g
     |||||||| ||||||||||| ||||| | |||||| ||  c
3'   ccugacac cuucagugagg uccgu g cguugu gg  u
   cu        a           g     c a      a  gg 

Deep sequencing

24305 reads, 50 reads per million, 158 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 25328640-25328721 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000324700 ; EFR3B-002; intron 4

  OTTHUMT00000324808 ; EFR3B-003; intron 4

  OTTHUMT00000324699 ; EFR3B-001; intron 4

  ENST00000401432 ; EFR3B-002; intron 4

  ENST00000403714 ; EFR3B-003; intron 4

  ENST00000402191 ; EFR3B-001; intron 4

Database links

• EntrezGene:MIR1301
• HGNC:MIR1301
• RNAcentral:URS000075BFF2_9606
• miRBase Tracker:MI0003815

Mature sequence hsa-miR-1301-5p

• Accession: MIMAT0026639
• Sequence: 15 - cgcucuaggcaccgcagca - 33
• Deep sequencing: 134 reads, 39 experiments
• Evidence: experimental; Illumina [5]
• Predicted targets:
  • TargetScanVert:hsa-miR-1301-5p
  • miRDB:hsa-miR-1301-5p

Mature sequence hsa-miR-1301-3p

• Accession: MIMAT0005797
• Sequence: 48 - uugcagcugccugggagugacuuc - 71
• Deep sequencing: 24164 reads, 155 experiments
• Evidence: experimental; Illumina [2,5], 454 [3-4]
• Database links:
  • RNAcentral:URS00000FC8EB_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-1301-3p
  • miRDB:hsa-miR-1301-3p
  • microrna.org:hsa-miR-1301-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).
3. PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
4. PMID:19508715 "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing" Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T BMC Med Genomics. 2:35(2009).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).