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miRBase |
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Stem-loop sequence cin-mir-141 |
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Accession | MI0007168 (change log) | |||||||||
Description | Ciona intestinalis miR-141 stem-loop | |||||||||
Gene family | MIPF0000019; mir-8 | |||||||||
Stem-loop |
----------u gg u ug 5' gguguaucuu uca auagugu uagauuc |||||||||| ||| ||||||| |||||| a 3' uuacguagaa ggu ugucaca aucuagu cucugugcagc au c -- |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence cin-miR-141-5p |
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Accession | MIMAT0015260 |
Previous IDs | cin-miR-141* |
Sequence |
7 - aucuuggucauauaguguug - 26 |
Deep sequencing | 930 reads, 2 experiments |
Evidence | experimental; Illumina [3] |
Mature sequence cin-miR-141-3p |
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Accession | MIMAT0006103 |
Previous IDs | cin-miR-141 |
Sequence |
40 - uaacacugucugguaaagaugc - 61 |
Deep sequencing | 8047 reads, 2 experiments |
Evidence | experimental; Northern [1], Illumina [3] |
References |
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1 |
PMID:18047675
"Computational prediction and experimental validation of Ciona intestinalis microRNA genes"
BMC Genomics. 8:445(2007).
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2 |
PMID:18339653
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
Mol Biol Evol. 25:1067-1080(2008).
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3 |
PMID:20370911
"miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data"
Genome Biol. 11:R39(2010).
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