miRNA Entry for MI0007196

Stem-loop sequence csa-mir-141

Accession

MI0007196 (change log)

Description

Ciona savignyi miR-141 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

1 open access papers mention csa-mir-141
(1 sentences)

Stem-loop

   --u                   c    c       uc     c 
5'    uggucgucggucgcaucuu auca gcggugu  uagaa u
      ||||||||||||||||||| |||| |||||||  |||||  
3'    aucggcggcuagcguagaa uggu ugucaca  aucuu c
   uuc                   a    c       --     a

Get sequence

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CSAV2.0)	Overlapping transcripts
reftig_613: 31866-31949 [+]	sense ENSCSAVT00000000099 ; intron 2

Clustered miRNAs

< 10kb from csa-mir-141
csa-mir-200	reftig_613: 31353-31432 [+]
csa-mir-141	reftig_613: 31866-31949 [+]

Database links

miRBase Tracker:MI0007196

Mature sequence csa-miR-141
Accession	MIMAT0006129
Sequence	48 - uaacacugucugguaaagaugc - 69 Get sequence
Evidence	by similarity; MI0007168

References
1	PMID:18339653 "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica" Fu X, Adamski M, Thompson EM Mol Biol Evol. 25:1067-1080(2008).

miRBase

Stem-loop sequence csa-mir-141

Mature sequence csa-miR-141

References