Stem-loop sequence ptr-mir-141

Accession

MI0008541 (change log)

Previous IDs

ptr-mir-141-1

Description

Pan troglodytes miR-141 stem-loop

Gene family

MIPF0000019; mir-8

Stem-loop

   -    g    u   u       --    u        -   ugg  ua 
5'  ggcc gccc ggg ccaucuu  ccag acaguguu gga   uc  a
    |||| |||| ||| |||||||  |||| |||||||| |||   ||  u
3'  uugg uggg ccc gguagaa  gguc ugucacaa ccu   ag  u
   c    g    c   c       au    -        u   cga  ug 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Pan_tro3.0; GCA_000001515.5): chr12: 7286482-7286575 [+]
• Overlapping transcripts:

  sense

  ENSPTRT00000060941 ; ptr-mir-141-1-201; exon 1

Clustered miRNAs

< 10kb from ptr-mir-141

• ptr-mir-200c: chr12: 7286057-7286165 [+]
• ptr-mir-141: chr12: 7286482-7286575 [+]

Database links

• EntrezGene:MIR141-1
• miRBase Tracker:MI0008541

Mature sequence ptr-miR-141

• Accession: MIMAT0008036
• Sequence: 58 - uaacacugucugguaaagaugg - 79
• Evidence: by similarity; MI0000457
• Predicted targets:
  • TargetScanVert:ptr-miR-141

References

1. PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).