Stem-loop sequence cfa-mir-141

Accession

MI0010374 (change log)

Description

Canis familiaris miR-141 stem-loop

Gene family

MIPF0000019; mir-8

Stem-loop

   g    cucu   u       --    u        -   ugg  ua 
5'  ccgg    ggg ccaucuu  ccag acaguguu gga   uc  g
    ||||    ||| |||||||  |||| |||||||| |||   ||  u
3'  ggcc    ccc gguagaa  gguc ugucacaa ccu   ag  c
   g    ----   -       au    -        u   cga  ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CanFam3.1; GCA_000002285.2): chr27: 38081668-38081753 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cfa-mir-141

• cfa-mir-200c: chr27: 38082097-38082159 [-]
• cfa-mir-141: chr27: 38081668-38081753 [-]

Database links

• miRBase Tracker:MI0010374

Mature sequence cfa-miR-141

• Accession: MIMAT0009876
• Sequence: 58 - aacacugucugguaaagaugg - 78
• Evidence: by similarity; MI0002487
• Predicted targets:
  • TargetScanVert:cfa-miR-141
  • miRDB:cfa-miR-141

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).