Stem-loop sequence ppc-mir-2240c

AccessionMI0011192 (change log)
DescriptionPristionchus pacificus miR-2240c stem-loop
Gene family MIPF0000838; mir-2240
Stem-loop
   -  uacccuuu  -a     cuac u    u    u    -        uuuc      uaa 
5'  gg        gc  acucg    g cccu aucu cuga aaucucug    gaucac   u
    ||        ||  |||||    | |||| |||| |||| ||||||||    ||||||    
3'  cc        cg  ugagc    c ggga uagg gacu uuagggac    cuagug   u
   c  --uuaccu  ac     --ua -    u    u    c        ---c      ugg 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (El_Paco; GCA_000180635.3) Overlapping transcripts
ABKE03000048.1: 535739-535853 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2240c
ppc-mir-2240cABKE03000048.1: 535739-535853 [+]
ppc-mir-2240a-2ABKE03000048.1: 535876-535972 [+]
ppc-mir-2240a-1ABKE03000048.1: 536003-536099 [+]
ppc-mir-2240bABKE03000048.1: 536132-536221 [+]
ppc-mir-2240a-1ABKE03000048.1: 536257-536353 [+]
Database links

Mature sequence ppc-miR-2240c

Accession MIMAT0011691
Sequence

69 - 

ucccagggauucucaguggauu

 - 90

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).