Stem-loop sequence dsi-mir-982a

Accession

MI0011784 (change log)

Description

Drosophila simulans miR-982a stem-loop

Gene family

MIPF0000843; mir-982

Stem-loop

   c        gcu  a   uu   a    u       a    auuuu 
5'  gaaaucau   ag uca  aac agua cauguaa uuga     u
    ||||||||   || |||  ||| |||| ||||||| ||||     g
3'  uuuuggua   uc agu  uug uuau guacauu aacu     u
   -        -au  a   uc   c    u       -    auaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dsim_caf1; GCA_000259055.1): chrX: 3274561-3274652 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dsi-mir-982a

• dsi-mir-983b: chrX: 3277365-3277423 [+]
• dsi-mir-983a: chrX: 3277334-3277453 [-]
• dsi-mir-303: chrX: 3275250-3275335 [-]
• dsi-mir-982a: chrX: 3274561-3274652 [-]
• dsi-mir-2582a: chrX: 3274401-3274516 [-]
• dsi-mir-982b: chrX: 3273921-3274024 [-]
• dsi-mir-2582b: chrX: 3273790-3273868 [-]
• dsi-mir-982c: chrX: 3273520-3273624 [-]

Database links

• miRBase Tracker:MI0011784

Mature sequence dsi-miR-982a-5p

• Accession: MIMAT0012515
• Sequence: 19 - uuaacaaguaucauguaaauugaa - 42
• Evidence: experimental; Illumina [1-2]

Mature sequence dsi-miR-982a-3p

• Accession: MIMAT0037361
• Sequence: 57 - aauuacauguuauucguucuug - 78
• Evidence: experimental; Illumina [2]

References

1. PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).
2. PMID:24985917 "Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines" Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC Genome Res. 24:1236-1250(2014).