Stem-loop sequence mtr-MIR2588b

Accession

MI0011806 (change log)

Description

Medicago truncatula miR2588b stem-loop

Gene family

MIPF0001030; MIR2588

Stem-loop

   -     a                   c                         aaaauauuuauuuucuuaaaacaaaacacuuaacacauuacauuaauguuacacucaacaauguuucaucgucuaacaugauugcacgcuuaaauuaaacuaaaaaaaacaacauguuacaaggauuauucacuuuacuugauuaaauaucaagc 
5'  agaua guccuuuaacuuuguaaca ugugcaacuaaguccuuccguuaac                                                                                                                                                           u
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3'  ucuau caggaaauugaaacauugu auauguugauucaggaaggcaauug                                                                                                                                                           u
   g     c                   c                         aguggcaguuuuuuugcgacugcaccgacacuucagacacuacaccguacguuuuccguuuuuguacaauaauuaaccuuuuacaauacuaauaaaaacuucuaacgauuacauugaacguacaacaaccgaaauugaauacaauaacguuguua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 14068100-14068514 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011806

Mature sequence mtr-miR2588b

• Accession: MIMAT0013259
• Sequence: 21 - uaacacugugcaacuaagucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).