Stem-loop sequence cin-mir-92e

Accession

MI0015495 (change log)

Description

Ciona intestinalis miR-92e stem-loop

Literature search

1 open access papers mention cin-mir-92e
(1 sentences)

Stem-loop

       g    ug      -   a  g 
5' cggu uggg  ggugca uga uc u
   |||| ||||  |||||| ||| || u
3' guca aucc  ucacgu auu ag g
       g    cu      u   a  u 

Deep sequencing

1422 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (JGI2)	Overlapping transcripts
1p: 2628718-2628769 [-]	intergenic
1p: 2635396-2635447 [-]	intergenic

Clustered miRNAs

< 10kb from cin-mir-92e

• cin-mir-92b: 1p: 2635676-2635776 [-]
• cin-mir-92e: 1p: 2635396-2635447 [-]
• cin-mir-4038: 1p: 2634947-2635001 [-]
• cin-mir-92e: 1p: 2628718-2628769 [-]

Database links

• EntrezGene:mir92e
• miRBase Tracker:MI0015495

Mature sequence cin-miR-92e-5p

• Accession: MIMAT0016421
• Sequence: 1 - cggugugggugggugcauga - 20
• Deep sequencing: 1333 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cin-miR-92e-3p

• Accession: MIMAT0016422
• Sequence: 33 - uauugcacuucccuagacug - 52
• Deep sequencing: 89 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20370911 "miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data" Hendrix D, Levine M, Shi W Genome Biol. 11:R39(2010).