Stem-loop sequence cin-mir-4005b

AccessionMI0015527 (change log)
DescriptionCiona intestinalis miR-4005b stem-loop
Gene family MIPF0001007; mir-4005
Stem-loop
   u           a  a g      uau 
5'  gaguuggugcu uc u cuugug   u
    ||||||||||| || | ||||||    
3'  cucgaccauga ag g gaacac   a
   u           -  - g      ugc 
Get sequence
Deep sequencing
175 reads, 50 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (JGI2) Overlapping transcripts
7q: 6154057-6154110 [-]
intergenic
Clustered miRNAs
< 10kb from cin-mir-4005b
cin-mir-4077d7q: 6165860-6165915 [-]
cin-mir-4077b7q: 6155725-6155780 [-]
cin-mir-4003b7q: 6154672-6154730 [-]
cin-mir-4005b7q: 6154057-6154110 [-]
cin-mir-4077d7q: 6153229-6153284 [-]
cin-mir-4003a-17q: 6152459-6152516 [-]
cin-mir-4003c7q: 6151685-6151739 [-]
cin-mir-4077a7q: 6150979-6151034 [-]
cin-mir-4003a-47q: 6150122-6150179 [-]
cin-mir-4003d7q: 6148874-6148927 [-]
Database links

Mature sequence cin-miR-4005b-5p

Accession MIMAT0016467
Sequence

1 - 

ugaguuggugcuaucaugcu

 - 20

Get sequence
Deep sequencing175 reads, 2 experiments
Evidence experimental; Illumina [1]

Mature sequence cin-miR-4005b-3p

Accession MIMAT0016468
Sequence

35 - 

caaggggaaguaccagcucu

 - 54

Get sequence
Evidence experimental; Illumina [1]

References

1