Stem-loop sequence mmu-mir-1934

Accession

MI0009923 (change log)

Symbol

MGI:Mir1934

Description

Mus musculus miR-1934 stem-loop

Literature search

1 open access papers mention mmu-mir-1934
(1 sentences)

Stem-loop

   --       u    u ug     -   cu         gucca 
5'   cugggcc ucuu c  guccc cug  ucguccucu     g
     ||||||| |||| |  ||||| |||  |||||||||      
3'   gacucgg agag g  cgggg ggc  aguaggaga     a
   gc       u    u gu     u   --         auugu 

Deep sequencing

58848 reads, 166 reads per million, 101 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 69663043-69663125 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir1934
• MGI:Mir1934
• RNAcentral:URS000075D4C4_10090
• miRBase Tracker:MI0009923

Mature sequence mmu-miR-1934-5p

• Accession: MIMAT0009398
• Previous IDs: mmu-miR-1934
• Sequence: 13 - ucugguccccugcuucguccucu - 35
• Deep sequencing: 493 reads, 66 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000011AD38_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1934-5p
  • miRDB:mmu-miR-1934-5p
  • microrna.org:mmu-miR-1934-5p

Mature sequence mmu-miR-1934-3p

• Accession: MIMAT0017341
• Previous IDs: mmu-miR-1934*
• Sequence: 50 - aggaugacgguggggcugguga - 71
• Deep sequencing: 6614 reads, 82 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000004C602_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1934-3p
  • miRDB:mmu-miR-1934-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).