Stem-loop sequence mmu-mir-219b

Accession

MI0024990 (change log)

Symbol

MGI:Mir219b

Description

Mus musculus miR-219b stem-loop

Gene family

MIPF0000044; mir-219

Literature search

48 open access papers mention mmu-mir-219b
(442 sentences)

Stem-loop

   --a   -      c a       ------------   u 
5'    gau guccag c caauucu            cgg u
      ||| |||||| | |||||||            |||  
3'    cua cagguu g guuaaga            gcc g
   uga   a      u c       acaugcucagac   g 

Deep sequencing

190 reads, 0 reads per million, 56 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 29845647-29845711 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000083551 ; Mir219-2-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-219b

• mmu-mir-219a-2: chr2: 29845631-29845727 [-]
• mmu-mir-219b: chr2: 29845647-29845711 [+]

Database links

• MGI:Mir219b
• miRBase Tracker:MI0024990

Mature sequence mmu-miR-219b-5p

• Accession: MIMAT0029806
• Sequence: 1 - agauguccagccacaauucucg - 22
• Deep sequencing: 13 reads, 9 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-219b-5p
  • miRDB:mmu-miR-219b-5p

Mature sequence mmu-miR-219b-3p

• Accession: MIMAT0029807
• Sequence: 43 - agaauugcguuuggacaaucagu - 65
• Deep sequencing: 175 reads, 52 experiments
• Evidence: experimental; RNAseq [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-219b-3p
  • miRDB:mmu-miR-219b-3p

References

1. PMID:23325850 "Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues" Castellano L, Stebbing J Nucleic Acids Res. 41:3339-3351(2013).