Stem-loop sequence ptc-MIR7828

Accession

MI0025488 (change log)

Description

Populus trichocarpa miR7828 stem-loop

Stem-loop

   uuuuuuua                       u          -uaau    aauguugugagugagcauaaaauuugggaugugaauaugug 
5'         aaaugaugacauggacaccaaaa cuuacaagaa     gguu                                         u
           ||||||||||||||||||||||| ||||||||||     ||||                                          
3'         uuuacuacuguaccugugguuuu gaauguuuuu     ccag                                         u
   auagguaa                       u          uuaau    aaauagugagauccauacgguacugugguuaauuggguucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000337.2: 35822741-35822925 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025488

Mature sequence ptc-miR7828

• Accession: MIMAT0030388
• Sequence: 13 - gaugacauggacaccaaaauc - 33
• Evidence: experimental; Illumina [1]

References

1. PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).