Stem-loop sequence ppc-mir-8320

AccessionMI0027021 (change log)
DescriptionPristionchus pacificus miR-8320 stem-loop
Stem-loop
   --     ga   u   c  -      - ggg 
5'   aaucc  gcu cgg cu gugaca c   a
     |||||  ||| ||| || |||||| |    
3'   uuggg  cga gcc ga cacugu g   c
   ac     ga   -   a  u      u aag 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (El_Paco; GCA_000180635.3) Overlapping transcripts
ABKE03000073.1: 227746-227804 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-8320
ppc-mir-2272ABKE03000073.1: 220023-220140 [+]
ppc-mir-8263ABKE03000073.1: 220213-220275 [+]
ppc-mir-2273ABKE03000073.1: 220330-220428 [+]
ppc-mir-8223ABKE03000073.1: 220630-220686 [+]
ppc-mir-2267ABKE03000073.1: 220769-220883 [+]
ppc-mir-8351ABKE03000073.1: 225677-225741 [+]
ppc-mir-8299ABKE03000073.1: 226063-226119 [+]
ppc-mir-8348ABKE03000073.1: 226430-226488 [+]
ppc-mir-8282bABKE03000073.1: 226545-226603 [+]
ppc-mir-8282aABKE03000073.1: 226753-226811 [+]
ppc-mir-8282cABKE03000073.1: 227223-227281 [+]
ppc-mir-8358ABKE03000073.1: 227347-227413 [+]
ppc-mir-8320ABKE03000073.1: 227746-227804 [+]
ppc-mir-8274ABKE03000073.1: 234904-234962 [-]
ppc-mir-8307ABKE03000073.1: 235868-235928 [-]
ppc-mir-8356bABKE03000073.1: 236097-236161 [-]
ppc-mir-8356aABKE03000073.1: 236205-236266 [-]
ppc-mir-8255ABKE03000073.1: 237101-237162 [-]
Database links

Mature sequence ppc-miR-8320-5p

Accession MIMAT0033180
Sequence

1 - 

aauccgagcuucggccugugaca

 - 23

Get sequence
Evidence experimental; Illumina [1]

Mature sequence ppc-miR-8320-3p

Accession MIMAT0033181
Sequence

37 - 

ucacuagaccgagcagggguuca

 - 59

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).