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Arabidopsis thaliana miRNAs (299 sequences)
ID
Accession
RPM
Chromosome
Start
End
Strand
Fetch
ath-MIR156a
MI0000178
2.26e+04
chr2
10676451
10676573
-
ath-MIR156b
MI0000179
2.34e+04
chr4
15074899
15075081
+
ath-MIR156c
MI0000180
2.26e+04
chr4
15415418
15415521
-
ath-MIR156d
MI0000181
2.24e+04
chr5
3456632
3456749
-
ath-MIR156e
MI0000182
2.21e+04
chr5
3867207
3867313
+
ath-MIR156f
MI0000183
2.21e+04
chr5
9136106
9136237
+
ath-MIR156g
MI0001082
2.12e+04
chr2
8412516
8412618
-
ath-MIR156h
MI0001083
7.01e+03
chr5
22597012
22597117
-
ath-MIR156i
MI0019232
0.722
chr1
19806917
19807113
-
ath-MIR156j
MI0019234
-
chr2
17589020
17589087
-
ath-MIR157a
MI0000184
7.8e+03
chr1
24913202
24913299
-
ath-MIR157b
MI0000185
7.79e+03
chr1
24921086
24921217
+
ath-MIR157c
MI0000186
8.02e+03
chr3
6244500
6244716
-
ath-MIR157d
MI0000187
6.65e+03
chr1
18026811
18027031
-
ath-MIR158a
MI0000188
2.57e+04
chr3
3366331
3366430
-
ath-MIR158b
MI0001084
2.52e+04
chr1
20772218
20772302
+
ath-MIR159a
MI0000189
8.21e+04
chr1
27713233
27713416
-
ath-MIR159b
MI0000218
8.23e+04
chr1
6220646
6220841
+
ath-MIR159c
MI0001085
8.42e+04
chr2
18994632
18994856
+
ath-MIR160a
MI0000190
2.56e+04
chr2
16340279
16340363
+
ath-MIR160b
MI0000191
2.4e+04
chr4
9888982
9889070
+
ath-MIR160c
MI0000192
2.43e+04
chr5
19009094
19009182
-
ath-MIR161
MI0000193
8.67e+04
chr1
17825685
17825857
+
ath-MIR162a
MI0000194
5.27e+03
chr5
2634905
2635044
-
ath-MIR162b
MI0000195
5.09e+03
chr5
7740598
7740708
-
ath-MIR163
MI0000196
4.09e+03
chr1
24884066
24884396
+
ath-MIR164a
MI0000197
6.78e+04
chr2
19520752
19520864
+
ath-MIR164b
MI0000198
6.85e+04
chr5
287584
287736
+
ath-MIR164c
MI0001087
6.8e+04
chr5
9852674
9852775
+
ath-MIR165a
MI0000199
2.61e+04
chr1
78927
79037
-
ath-MIR165b
MI0000200
2.61e+04
chr4
369831
370012
-
ath-MIR166a
MI0000201
2.69e+04
chr2
19176108
19176277
+
ath-MIR166b
MI0000202
2.69e+04
chr3
22922206
22922325
+
ath-MIR166c
MI0000203
2.68e+04
chr5
2838635
2838773
+
ath-MIR166d
MI0000204
2.5e+04
chr5
2840622
2840734
+
ath-MIR166e
MI0000205
2.53e+04
chr5
16775520
16775662
-
ath-MIR166f
MI0000206
2.51e+04
chr5
17516301
17516405
+
ath-MIR166g
MI0000207
2.51e+04
chr5
25504798
25504919
+
ath-MIR167a
MI0000208
1.67e+05
chr3
8108072
8108209
+
ath-MIR167b
MI0000209
1.66e+05
chr3
23406168
23406276
+
ath-MIR167c
MI0001088
1.67e+05
chr3
1306622
1306781
-
ath-MIR167d
MI0000975
1.67e+05
chr1
11137539
11137915
+
ath-MIR168a
MI0000210
3.64e+04
chr4
10578635
10578772
+
ath-MIR168b
MI0000211
2.91e+04
chr5
18358788
18358911
-
ath-MIR169a
MI0000212
8.47e+03
chr3
4358994
4359219
-
ath-MIR169b
MI0000976
7.54e+03
chr5
8527469
8527649
+
ath-MIR169c
MI0000977
9.71e+03
chr5
15870590
15871000
-
ath-MIR169d
MI0000978
7.32e+03
chr1
20039463
20039616
-
ath-MIR169e
MI0000979
7.27e+03
chr1
20041518
20041734
+
ath-MIR169f
MI0000980
1.02e+04
chr3
4805684
4805850
-
ath-MIR169g
MI0000981
9.99e+03
chr4
11482879
11483257
-
ath-MIR169h
MI0000982
3.59e+03
chr1
6695420
6695609
-
ath-MIR169i
MI0000983
3.61e+03
chr3
9871960
9872165
-
ath-MIR169j
MI0000984
3.67e+03
chr3
9872333
9872553
-
ath-MIR169k
MI0000985
3.58e+03
chr3
9875525
9875737
-
ath-MIR169l
MI0000986
3.47e+03
chr3
9875893
9876103
-
ath-MIR169m
MI0000987
3.7e+03
chr3
9878168
9878379
-
ath-MIR169n
MI0000988
3.66e+03
chr3
9878540
9878754
-
ath-MIR170
MI0000213
7.69e+03
chr5
26411580
26411672
-
ath-MIR171a
MI0000214
3.21e+04
chr3
19073434
19073556
+
ath-MIR171b
MI0000989
7.68e+03
chr1
3961348
3961464
-
ath-MIR171c
MI0000990
4.29e+04
chr1
22930089
22930204
-
ath-MIR172a
MI0000215
4.15e+04
chr2
11942914
11943015
-
ath-MIR172b
MI0000216
4.47e+04
chr5
1188207
1188301
-
ath-MIR172c
MI0000991
4.16e+04
chr3
3599776
3599908
-
ath-MIR172d
MI0000992
4.18e+04
chr3
20587904
20588027
+
ath-MIR172e
MI0001089
4.46e+04
chr5
23988472
23988596
+
ath-MIR173
MI0000217
2.21e+03
chr3
8236153
8236254
+
ath-MIR319a
MI0000544
5.17e+03
chr4
12352956
12353131
+
ath-MIR319b
MI0000545
6.65e+03
chr5
16660469
16660640
-
ath-MIR319c
MI0001086
3.37e+04
chr2
17029701
17029899
+
ath-MIR390a
MI0001000
6.58e+04
chr2
16061954
16062060
+
ath-MIR390b
MI0001001
6.58e+04
chr5
23636947
23637066
+
ath-MIR391
MI0001002
4.29e+03
chr5
24293093
24293298
+
ath-MIR393a
MI0001003
7.38e+03
chr2
16652101
16652233
+
ath-MIR393b
MI0001004
7.39e+03
chr3
20691647
20691806
+
ath-MIR394a
MI0001005
889
chr1
7058194
7058310
+
ath-MIR394b
MI0001006
859
chr1
28568808
28568928
+
ath-MIR395a
MI0001007
471
chr1
9363196
9363288
-
ath-MIR395b
MI0001008
454
chr1
9364471
9364570
+
ath-MIR395c
MI0001009
454
chr1
9367080
9367179
+
ath-MIR395d
MI0001010
454
chr1
26269979
26270078
-
ath-MIR395e
MI0001011
471
chr1
26272776
26272870
-
ath-MIR395f
MI0001012
454
chr1
26273858
26273969
+
ath-MIR396a
MI0001013
1.03e+04
chr2
4142323
4142473
-
ath-MIR396b
MI0001014
3.57e+03
chr5
13611798
13611932
+
ath-MIR397a
MI0001015
1.67e+03
chr4
2625950
2626056
+
ath-MIR397b
MI0001016
1.67e+03
chr4
7878652
7878760
-
ath-MIR398a
MI0001017
4.8e+04
chr2
1040938
1041042
+
ath-MIR398b
MI0001018
2.82e+04
chr5
4691022
4691137
+
ath-MIR398c
MI0001019
2.82e+04
chr5
4694694
4694808
+
ath-MIR399a
MI0001020
3.61e+03
chr1
10227073
10227195
+
ath-MIR399b
MI0001021
4.48e+03
chr1
23345377
23345511
-
ath-MIR399c
MI0001022
4.34e+03
chr5
24962485
24962598
+
ath-MIR399d
MI0001023
3.54e+03
chr2
14442978
14443077
-
ath-MIR399e
MI0001024
949
chr2
14443504
14443612
+
ath-MIR399f
MI0001025
3.62e+03
chr2
14444997
14445114
+
ath-MIR400
MI0001069
893
chr1
11785936
11786037
+
ath-MIR401
MI0001070
791
chr4
5020237
5020486
-
ath-MIR402
MI0001071
124
chr1
29016520
29016828
+
ath-MIR403
MI0001072
6.23e+03
chr2
19415052
19415186
+
ath-MIR404
MI0001073
114
chr1
11230463
11230612
-
ath-MIR405a
MI0001074
3.56e+03
chr2
9634957
9635113
-
ath-MIR405b
MI0001075
823
chr5
20632514
20632637
+
ath-MIR405d
MI0001077
1.66e+03
chr4
2789656
2789741
-
ath-MIR406
MI0001078
449
chr1
19430078
19430277
-
ath-MIR407
MI0001079
133
chr2
13866205
13866467
+
ath-MIR408
MI0001080
7.88e+03
chr2
19319814
19320031
+
ath-MIR413
MI0001424
-
chr1
23058034
23058156
+
ath-MIR414
MI0001425
219
chr1
25137456
25137563
-
ath-MIR415
MI0001426
-
chr1
27987016
27987125
+
ath-MIR416
MI0001427
116
chr2
7008520
7008599
+
ath-MIR417
MI0001428
24.9
chr2
13708748
13708864
-
ath-MIR418
MI0001429
-
chr3
6516218
6516290
+
ath-MIR419
MI0001430
-
chr4
15660370
15660475
+
ath-MIR420
MI0001431
-
chr5
25230568
25230667
-
ath-MIR426
MI0001441
-
chr1
22107346
22107456
+
ath-MIR447a
MI0002407
1.5e+03
chr4
1528134
1528370
-
ath-MIR447b
MI0002408
1.5e+03
chr4
1535426
1535661
-
ath-MIR447c
MI0002409
1.15e+03
chr4
1523306
1523503
-
ath-MIR472
MI0005102
782
chr1
4182132
4182299
-
ath-MIR771
MI0005101
1.37e+03
chr3
19659301
19659413
-
ath-MIR773a
MI0005103
110
chr1
13067251
13067335
+
ath-MIR773b
MI0014666
118
chr1
13050667
13050864
-
ath-MIR774a
MI0005104
82
chr1
22149936
22150033
+
ath-MIR774b
MI0014668
-
chr1
22150128
22150266
+
ath-MIR775
MI0005105
1.13e+04
chr1
29422452
29422574
+
ath-MIR776
MI0005106
427
chr1
22795618
22795735
+
ath-MIR777
MI0005107
191
chr1
26638000
26638107
+
ath-MIR778
MI0005108
147
chr2
17349437
17349574
-
ath-MIR779
MI0005109
148
chr2
9560761
9560923
+
ath-MIR780
MI0005110
1.19e+04
chr4
8504141
8504314
-
ath-MIR781a
MI0005111
127
chr1
7423518
7423611
+
ath-MIR781b
MI0019231
-
chr1
7423521
7423607
-
ath-MIR782
MI0005112
-
chr3
5500037
5500147
+
ath-MIR783
MI0005113
3.62e+03
chr1
24721121
24721451
+
ath-MIR822
MI0005379
1.06e+04
chr5
897020
897356
-
ath-MIR823
MI0005380
2.96e+03
chr3
4496775
4496965
-
ath-MIR824
MI0005409
4.19e+03
chr4
12625094
12625782
+
ath-MIR825
MI0005381
733
chr2
11159660
11159845
+
ath-MIR826
MI0005382
407
chr4
1340479
1340656
+
ath-MIR827
MI0005383
721
chr3
22122760
22122936
-
ath-MIR828
MI0005384
195
chr4
13846971
13847161
+
ath-MIR829
MI0005385
561
chr1
11834022
11834226
-
ath-MIR830
MI0005386
1.02e+03
chr1
4820355
4820549
-
ath-MIR831
MI0005387
333
chr2
10247206
10247462
+
ath-MIR832
MI0005388
113
chr4
6413010
6413342
+
ath-MIR833a
MI0005389
188
chr1
29525151
29525337
+
ath-MIR833b
MI0019230
12.8
chr1
29525202
29525286
-
ath-MIR834
MI0005390
53.2
chr5
2641426
2641674
-
ath-MIR835
MI0005391
412
chr1
28544454
28544853
-
ath-MIR836
MI0005392
202
chr2
10634280
10634616
-
ath-MIR837
MI0005393
755
chr1
6520941
6521124
+
ath-MIR838
MI0005394
82.4
chr1
28500
28706
+
ath-MIR839
MI0005395
5.13e+03
chr1
25278944
25279207
-
ath-MIR840
MI0005396
465
chr2
771337
771562
-
ath-MIR841a
MI0005397
1.22e+03
chr4
7885251
7885462
-
ath-MIR841b
MI0014669
1.49e+03
chr4
2184135
2184629
+
ath-MIR842
MI0005398
254
chr1
22577067
22577265
+
ath-MIR843
MI0005399
715
chr3
17742098
17742302
+
ath-MIR844
MI0005400
1.07e+03
chr2
9942151
9942335
-
ath-MIR845a
MI0005401
2.7e+03
chr4
12217406
12217568
-
ath-MIR845b
MI0005444
358
chr4
12214069
12214167
-
ath-MIR846
MI0005402
743
chr1
22577375
22577733
+
ath-MIR847
MI0005410
235
chr1
2165517
2165746
+
ath-MIR848
MI0005403
344
chr5
4479397
4479591
-
ath-MIR849
MI0005404
180
chr3
16072449
16072637
-
ath-MIR850
MI0005405
253
chr4
7845707
7845927
+
ath-MIR851
MI0005406
409
chr3
19659532
19659715
-
ath-MIR852
MI0005407
802
chr4
8336166
8336373
+
ath-MIR853
MI0005408
323
chr3
8346367
8346656
+
ath-MIR854a
MI0005412
506
chr5
11847719
11847939
+
ath-MIR854b
MI0005413
550
chr5
11324370
11324590
-
ath-MIR854c
MI0005414
518
chr5
11838096
11838316
+
ath-MIR854d
MI0005415
550
chr5
11689861
11690081
-
ath-MIR854e
MI0015956
550
chr5
11942467
11942687
+
ath-MIR855
MI0005411
332
chr2
4674427
4674698
+
ath-MIR856
MI0005433
694
chr1
11957460
11957730
+
ath-MIR857
MI0005434
40.2
chr4
7878185
7878561
-
ath-MIR858a
MI0005435
312
chr1
26773539
26773725
-
ath-MIR858b
MI0019228
-
chr1
26772633
26772935
+
ath-MIR859
MI0005436
173
chr1
22149718
22149843
+
ath-MIR860
MI0005437
298
chr5
9098791
9098916
+
ath-MIR861
MI0005438
63.8
chr3
17838135
17838266
-
ath-MIR862
MI0005439
117
chr2
10718096
10718198
+
ath-MIR863
MI0005440
700
chr4
7846597
7846899
+
ath-MIR864
MI0005441
312
chr1
6740500
6740591
+
ath-MIR865
MI0005442
214
chr5
5169990
5170131
+
ath-MIR866
MI0005443
236
chr5
16157823
16157948
-
ath-MIR867
MI0005445
573
chr4
11375364
11375481
+
ath-MIR868
MI0005446
127
chr3
6488234
6488426
+
ath-MIR869
MI0005447
650
chr5
15891579
15891873
-
ath-MIR870
MI0005448
179
chr5
21395545
21395629
-
ath-MIR1886
MI0008303
862
chr2
15611870
15611982
+
ath-MIR1887
MI0008304
330
chr4
11370263
11370325
+
ath-MIR1888a
MI0008305
224
chr5
7168870
7168969
+
ath-MIR1888b
MI0019247
191
chr3
22537283
22537417
+
ath-MIR2111a
MI0010630
17.1
chr3
2854284
2854442
+
ath-MIR2111b
MI0010631
255
chr5
400358
400524
+
ath-MIR2112
MI0010632
277
chr1
234006
234159
-
ath-MIR2933a
MI0013362
310
chr1
11901409
11901520
+
ath-MIR2933b
MI0013363
295
chr3
17402762
17402873
-
ath-MIR2934
MI0013364
58.6
chr3
5500032
5500152
-
ath-MIR2936
MI0013366
-
chr4
1046804
1046983
-
ath-MIR2937
MI0013367
168
chr5
13622416
13622838
+
ath-MIR2938
MI0013368
-
chr5
22251822
22251921
-
ath-MIR2939
MI0013369
189
chr5
19566960
19567084
+
ath-MIR3434
MI0014667
483
chr5
7583055
7583403
-
ath-MIR3440b
MI0015818
55.3
chr3
6217476
6217600
+
ath-MIR3932a
MI0016587
228
chr4
2179000
2179122
+
ath-MIR3932b
MI0016588
246
chr4
7890570
7890719
-
ath-MIR3933
MI0016589
276
chr5
15758105
15758192
+
ath-MIR4221
MI0015815
-
chr4
8460516
8460662
+
ath-MIR4227
MI0015816
-
chr1
22372670
22372790
+
ath-MIR4228
MI0015817
284
chr1
28889375
28889532
+
ath-MIR4239
MI0015819
34.4
chr4
11368752
11368874
+
ath-MIR4240
MI0015820
544
chr4
10711558
10711762
-
ath-MIR4243
MI0015821
-
chr5
19567208
19567386
+
ath-MIR4245
MI0020194
448
chr5
21161506
21161652
+
ath-MIR5012
MI0017880
145
chr2
8432648
8432796
+
ath-MIR5013
MI0017881
49.6
chr2
7166817
7166975
+
ath-MIR5014a
MI0017882
1.12e+03
chr1
24553909
24554049
+
ath-MIR5014b
MI0020195
1.28e+03
chr1
24605427
24605567
-
ath-MIR5015
MI0017883
60.2
chr5
20554881
20555053
-
ath-MIR5016
MI0017884
77.5
chr2
9919984
9920197
+
ath-MIR5017
MI0017885
1.91e+03
chr4
11962901
11963078
-
ath-MIR5018
MI0017886
382
chr1
24543740
24544014
-
ath-MIR5019
MI0017887
189
chr2
10403230
10403370
+
ath-MIR5020a
MI0017888
724
chr4
6791301
6791470
-
ath-MIR5020b
MI0017893
834
chr4
6787003
6787153
-
ath-MIR5020c
MI0019203
-
chr2
4770538
4770646
+
ath-MIR5021
MI0017889
849
chr2
11974711
11974881
-
ath-MIR5022
MI0017891
297
chr1
22372462
22372578
+
ath-MIR5023
MI0017892
60.7
chr3
5496985
5497119
-
ath-MIR5024
MI0017894
53.8
chr1
16766259
16766438
-
ath-MIR5025
MI0017895
331
chr1
16993891
16994045
+
ath-MIR5026
MI0017896
2.7e+03
chr4
7844496
7844688
+
ath-MIR5027
MI0017897
108
chr5
10943902
10944062
+
ath-MIR5028
MI0017898
225
chr4
6546647
6546827
-
ath-MIR5029
MI0017899
330
chr5
12268507
12268697
+
ath-MIR5595a
MI0020188
60.7
chr2
10026910
10027050
-
ath-MIR5628
MI0019199
125
chr5
17985850
17985995
+
ath-MIR5629
MI0019200
331
chr5
3802714
3803062
+
ath-MIR5630a
MI0019201
-
chr1
12011152
12011223
-
ath-MIR5630b
MI0019211
-
chr1
12023526
12023597
-
ath-MIR5631
MI0019202
0.722
chr5
7122566
7122688
-
ath-MIR5632
MI0019204
-
chr2
8392449
8392608
-
ath-MIR5633
MI0019205
44.7
chr3
19544751
19545106
+
ath-MIR5634
MI0019206
30.7
chr4
14982320
14982545
+
ath-MIR5635a
MI0019207
2.28e+03
chr5
6926005
6926446
+
ath-MIR5635b
MI0019229
1.22e+03
chr1
20622538
20622719
-
ath-MIR5635c
MI0019239
2.02e+03
chr4
13316754
13316927
-
ath-MIR5635d
MI0019217
610
chr4
1023912
1024149
+
ath-MIR5636
MI0019208
30.7
chr1
18549959
18550036
+
ath-MIR5637
MI0019209
298
chr2
12270179
12270373
-
ath-MIR5638a
MI0019210
122
chr3
15336705
15337170
-
ath-MIR5638b
MI0019219
87.9
chr5
14099737
14100205
+
ath-MIR5639
MI0019212
1.03e+03
chr2
10356782
10357163
+
ath-MIR5640
MI0019213
475
chr1
1653221
1653624
-
ath-MIR5641
MI0019214
85.5
chr5
9022836
9023326
+
ath-MIR5642a
MI0019215
1.29e+03
chr3
14196774
14197147
+
ath-MIR5642b
MI0019246
1.11e+03
chr2
2805
3176
+
ath-MIR5643a
MI0019216
195
chr5
11667797
11667879
+
ath-MIR5643b
MI0019256
1.46e+03
chr5
11757140
11757222
-
ath-MIR5644
MI0019218
77
chr5
16649994
16650138
+
ath-MIR5645a
MI0019220
819
chr3
17418776
17419220
+
ath-MIR5645b
MI0019221
525
chr4
4889421
4889914
+
ath-MIR5645c
MI0019225
283
chr3
14742421
14742804
+
ath-MIR5645d
MI0019244
352
chr1
16116572
16117041
+
ath-MIR5645e
MI0019257
277
chr4
5321227
5321643
+
ath-MIR5645f
MI0019252
574
chr5
14946671
14947169
-
ath-MIR5646
MI0019222
46.9
chr2
3517383
3517452
-
ath-MIR5647
MI0019223
142
chr1
22084264
22084683
-
ath-MIR5648
MI0019224
145
chr1
11499384
11499883
+
ath-MIR5649a
MI0019226
-
chr1
21360151
21360251
+
ath-MIR5649b
MI0019248
24.9
chr1
21360151
21360251
-
ath-MIR5650
MI0019227
33.2
chr2
19686957
19687039
+
ath-MIR5651
MI0019233
880
chr3
17178447
17178608
+
ath-MIR5652
MI0019235
474
chr1
23412989
23413436
-
ath-MIR5653
MI0019236
9.68e+03
chr1
19026915
19027000
-
ath-MIR5654
MI0019237
156
chr1
11786292
11786371
+
ath-MIR5655
MI0019238
158
chr2
18902541
18903035
+
ath-MIR5656
MI0019240
78.3
chr1
1727263
1727415
+
ath-MIR5657
MI0019241
102
chr5
9789582
9789666
+
ath-MIR5658
MI0019242
171
chr4
18485438
18485531
-
ath-MIR5659
MI0019243
75.7
chr5
16409804
16409862
-
ath-MIR5660
MI0019245
-
chr4
5292626
5292820
-
ath-MIR5661
MI0019249
55.1
chr4
10449329
10449409
+
ath-MIR5662
MI0019250
1.53e+03
chr2
16798584
16798870
+
ath-MIR5663
MI0019251
601
chr1
18686855
18686966
-
ath-MIR5664
MI0019253
35.8
chr1
17386795
17387008
+
ath-MIR5665
MI0019254
1.43e+03
chr5
19499055
19499533
-
ath-MIR5666
MI0019255
49.6
chr1
12035047
12035135
+
ath-MIR5995b
MI0020189
582
chr2
10026910
10027050
+
ath-MIR5996
MI0020190
272
chr4
7882765
7882889
-
ath-MIR5997
MI0020191
86.2
chr3
10706765
10706908
+
ath-MIR5998a
MI0020192
216
chr5
3247236
3247432
+
ath-MIR5998b
MI0020193
-
chr5
3247228
3247424
-
ath-MIR5999
MI0020196
-
chr1
7400802
7400992
-
Get selected sequences:
Stem-loop sequence
Mature sequence
Select sequences and output type, then click "Fetch Sequences":
Unaligned fasta format
ClustalW alignment