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29 publications mentioning bta-mir-1-1

Open access articles that are associated with the species Bos taurus and mention the gene name mir-1-1. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 43
Other miRNAs from this paper: bta-mir-29a, bta-let-7f-2, bta-mir-103-1, bta-mir-151, bta-mir-30d, bta-mir-320a-2, bta-mir-126, bta-mir-181a-2, bta-mir-27b, bta-mir-30b, bta-mir-31, bta-mir-34b, bta-mir-107, bta-mir-15b, bta-mir-181b-2, bta-mir-30e, bta-let-7d, bta-mir-124a-1, bta-mir-138-2, bta-mir-181c, bta-mir-214, bta-mir-455, bta-mir-93, bta-let-7g, bta-mir-10b, bta-mir-30a, bta-let-7a-1, bta-mir-487b, bta-let-7f-1, bta-mir-122, bta-mir-30c, bta-let-7i, bta-mir-25, bta-mir-34c, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7e, bta-mir-103-2, bta-mir-15a, bta-mir-34a, bta-mir-1-2, bta-mir-105b, bta-mir-124a-2, bta-mir-124b, bta-mir-133a-2, bta-mir-133a-1, bta-mir-133b, bta-mir-138-1, bta-mir-152, bta-mir-181d, bta-mir-196a-2, bta-mir-196a-1, bta-mir-206, bta-mir-30f, bta-mir-409a, bta-mir-432, bta-mir-486, bta-mir-495, bta-mir-543, bta-mir-9-1, bta-mir-9-2, bta-mir-1185, bta-mir-1271, bta-mir-181a-1, bta-mir-181b-1, bta-mir-2284i, bta-mir-2284s, bta-mir-2284l, bta-mir-2284j, bta-mir-2284t, bta-mir-2284d, bta-mir-2284n, bta-mir-2284g, bta-mir-2284p, bta-mir-2284u, bta-mir-2363-1, bta-mir-2363-2, bta-mir-2284f, bta-mir-2284a, bta-mir-2284k, bta-mir-2284c, bta-mir-2384, bta-mir-2284v, bta-mir-2284q, bta-mir-2404-1, bta-mir-2284m, bta-mir-2284b, bta-mir-320b, bta-mir-2424, bta-mir-2284r, bta-mir-2284h, bta-mir-2404-2, bta-mir-2284o, bta-mir-2284e, bta-mir-320a-1, bta-mir-424, bta-mir-2284w, bta-mir-2284x, bta-mir-409b, bta-mir-2284y-1, bta-mir-2284y-2, bta-mir-2284y-3, bta-mir-2284y-4, bta-mir-2284y-5, bta-mir-2284y-6, bta-mir-2284y-7, bta-mir-2284z-1, bta-mir-2284aa-1, bta-mir-2284z-3, bta-mir-2284aa-2, bta-mir-2284aa-3, bta-mir-2284z-4, bta-mir-2284z-5, bta-mir-2284z-6, bta-mir-2284z-7, bta-mir-2284aa-4, bta-mir-2284z-2, bta-mir-133c, bta-mir-2284ab, bta-mir-2284ac
Although the bovine-specific target genes of miRNA-206, miRNA-1, miRNA-133, miRn12, and miRn17 are not known, their consistent expression pattern and high conservation indicate that they are also likely to play roles in the development of bovine muscle tissues. [score:6]
miR-1 promotes myogenesis by targeting HDAC4, a transcriptional repressor of muscle gene expression. [score:5]
miR-1 promotes myogenesis by targeting histone deacetylase 4 (HDAC4), a transcriptional repressor of muscle gene expression. [score:5]
Comparison of miRNA expression profiles among tissues revealed that miR-2284x in liver, and miRNA-206, miRNA-1, miRNA-133, miRn12, and miRn17 in muscle-related tissue or organs (skeletal muscle, heart, intestines) were highly expressed (Figure 3). [score:5]
Previous studies in vitro have shown that miR-1, miR-133, and miR-206 can target multiple muscle-development-related genes. [score:4]
Based on stem-loop qPCR, 25 high-read miRNAs were detected, and the results showed that bta-miRNA-206, miRNA-1, miRNA-133, miRNAn12, and miRNAn17 were highly expressed in muscle-related tissue or organs, suggesting that these miRNAs may play a role in the development of bovine muscle tissues. [score:4]
For example, the expression of miR-103, miR-107, and miR-25 was higher in fetal bovine muscle tissue, in contrast with the patterns shown by miR-1, miR-133a, and miR-29a in adult bovine muscle tissue. [score:3]
However, the expression levels of bta-miRNA-206, miRNA-1, and miRn17 did not change between day 90 bovine embryo and 2-year muscle tissues, but significantly increased in the calf muscle tissue (Figure 3). [score:3]
Also, miR-1 and miR-206 regulate Pax7 directly. [score:3]
For example, miR-1 and miR-133 have distinct roles in modulating skeletal muscle proliferation and differentiation in cultured myoblasts in vitro and in Xenopus laevis embryos in vivo. [score:1]
For example, let-7, miR-1, miR-34, miR-9, and miR-25 families have been found in 64, 61, 56, 65 and 62 species, respectively, while miR-2363, miR-2384, miR-2404, miR-2424, and miR-409 families have only been detected in bos taurus (Additional file 8). [score:1]
In beef cattle, miR-9 and miR-124 in the brain, miR-122 in the liver, and miR-1, miR-133a, and miR-206 in muscle are all tissue-specific [42]. [score:1]
The largest miRNA family size identified was miR-2284, which consisted of 12 members, and let-7, miR-30, and miR-181/376 possessed 9, 7, and 4 members, respectively; whereas other miRNA families such as miR-1, miR-31, miR-93, and miR-206 had only one member (Additional file 1). [score:1]
MiR-206, miR-1, and miR-133 are muscle specific miRNAs [9]. [score:1]
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2
[+] score: 34
Other miRNAs from this paper: ssc-mir-122, ssc-mir-125b-2, ssc-mir-181b-2, ssc-mir-20a, ssc-mir-23a, ssc-mir-26a, ssc-mir-29b-1, ssc-mir-181c, ssc-mir-214, ssc-let-7c, ssc-let-7f-1, ssc-let-7i, ssc-mir-103-1, ssc-mir-107, ssc-mir-21, ssc-mir-29c, ssc-mir-30c-2, bta-mir-26a-2, bta-mir-29a, bta-let-7f-2, bta-mir-103-1, bta-mir-20a, bta-mir-21, bta-mir-26b, bta-mir-30d, bta-mir-499, bta-mir-99a, bta-mir-125b-1, bta-mir-126, bta-mir-181a-2, bta-mir-199a-1, bta-mir-30b, bta-mir-107, bta-mir-10a, bta-mir-127, bta-mir-142, bta-mir-181b-2, bta-mir-30e, bta-mir-92a-2, bta-let-7d, bta-mir-132, bta-mir-138-2, bta-mir-17, bta-mir-181c, bta-mir-192, bta-mir-199b, bta-mir-200a, bta-mir-200c, bta-mir-214, bta-mir-23a, bta-mir-29b-2, bta-mir-29c, bta-mir-455, bta-let-7g, bta-mir-10b, bta-mir-30a, bta-mir-200b, bta-let-7a-1, bta-let-7f-1, bta-mir-122, bta-mir-30c, bta-let-7i, bta-mir-25, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7e, bta-mir-103-2, bta-mir-125b-2, bta-mir-99b, ssc-mir-99b, ssc-mir-17, ssc-mir-30b, ssc-mir-199b, bta-mir-1-2, bta-mir-129-1, bta-mir-129-2, bta-mir-133a-2, bta-mir-133a-1, bta-mir-133b, bta-mir-135b, bta-mir-138-1, bta-mir-143, bta-mir-144, bta-mir-146b, bta-mir-146a, bta-mir-181d, bta-mir-190a, bta-mir-199a-2, bta-mir-202, bta-mir-206, bta-mir-211, bta-mir-212, bta-mir-223, bta-mir-26a-1, bta-mir-29d, bta-mir-30f, bta-mir-338, bta-mir-33a, bta-mir-33b, bta-mir-375, bta-mir-429, bta-mir-451, bta-mir-92a-1, bta-mir-92b, bta-mir-29e, bta-mir-29b-1, bta-mir-181a-1, bta-mir-181b-1, ssc-mir-133a-1, ssc-mir-1, ssc-mir-146b, ssc-mir-181a-1, ssc-mir-30a, bta-mir-199c, ssc-mir-206, ssc-let-7a-1, ssc-let-7e, ssc-let-7g, ssc-mir-133b, ssc-mir-29a, ssc-mir-30d, ssc-mir-30e, ssc-mir-199a-2, ssc-mir-499, ssc-mir-143, ssc-mir-10a, ssc-mir-10b, ssc-mir-103-2, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181d, ssc-mir-99a, ssc-mir-92a-2, ssc-mir-92a-1, ssc-mir-92b, ssc-mir-192, ssc-mir-142, ssc-mir-127, ssc-mir-202, ssc-mir-129a, ssc-mir-455, ssc-mir-125b-1, ssc-mir-338, ssc-mir-133a-2, ssc-mir-146a, bta-mir-26c, ssc-mir-30c-1, ssc-mir-126, ssc-mir-199a-1, ssc-mir-451, ssc-let-7a-2, ssc-mir-129b, ssc-mir-429, ssc-let-7d, ssc-let-7f-2, ssc-mir-29b-2, ssc-mir-132, ssc-mir-138, ssc-mir-144, ssc-mir-190a, ssc-mir-212, bta-mir-133c, ssc-mir-26b, ssc-mir-200b, ssc-mir-223, ssc-mir-375, ssc-mir-33b
Paula et al. (2017) showed that a short period of food restriction significantly increased the expression of miR-1, miR-206, miR-199, and miR-23a in fast muscle and significantly decreased the expression of miR-1 and miR-206 in slow muscle, while their targets (IGF-1 for miR-1, miR-206, and miR-199; mTOR for miR-199; and MFbx and PGC1a for miR-23a) exhibited negatively correlated expression profiles. [score:9]
Some muscle miRNAs have well-defined target genes, as miR-206 regulates IGF-1; miR-1, miR-122, and miR-462 control IGF-2a; the let-7 family regulates MSTN; miR-103 and miR-107 modulate GHR and FSHR; and miR-138 and miR-211 control LHR. [score:5]
In the skeletal muscle, the main edible part of the fish, miR-1, miR-133a, and miR-206 have conserved expression patterns in all farmed fish species, which makes them interesting molecules for modulating muscle development and growth. [score:4]
In tilapia, Yan et al. (2012a) and Nachtigall et al. (2015) showed that miR-1, miR-133a, and miR-206 have similar expression patterns in adult males and females and may assist each other to accurately control the development of skeletal muscles, although they perform distinct biological functions. [score:4]
MiR-1 is responsible for repressing the expression of histone deacetylase 4 (HDAC4), which is a negative regulator of cellular differentiation and thus promotes myocyte differentiation. [score:3]
The expression pattern of 12 miRNAs, including mir-1, mir-133 and mir-206, was validated by real time PCR. [score:3]
Duran et al. (2015) analyzed the impact of the miRNA-target interactions of miR-1/ hdac4, miR-133-a/b/ srf, miR-206/ pax7, and miR-499/ sox6 in fast- and slow-twitch skeletal muscles during growth. [score:3]
MiR-1, miR-133a, miR-133b, miR-206, and miR-499 have been shown to be involved in the control of genes related to myoblast proliferation and differentiation. [score:1]
The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. [score:1]
They found that miR-1 and miR-206 may promote myoblast differentiation in fast- and slow-twitch muscles in adult individuals, while miR-133a/b acts earlier, promoting myoblast proliferation in juveniles. [score:1]
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3
[+] score: 34
Comparison of miRNA expression profiles among tissues revealed that miR-154c in fat, and miRNA-1, miRNA-133 and miRNA-206 in muscle-related tissue or organs (skeletal muscle, heart) were specially expressed (Figure 5). [score:5]
Specifically, miR-1 promotes myogenesis by targeting HDAC4, a transcriptional repressor of muscle gene expression. [score:5]
Previous studies have shown that miR-1, miR-133, and miR-206 can target multiple muscle development related genes. [score:4]
In addition, bta-miR-199a-3p, -154c, -320a and -432 in backfat tissue, as well as bta-miR-1, -133a, -206, and -378 in muscle tissue, were significantly highly expressed, suggesting that they were likely to play roles in the development of bovine fat and/or muscle tissues and could be potential molecular markers for bovine genetics and breeding. [score:4]
Also, miR-1 and miR-206 regulate Pax7 directly. [score:3]
For example, bta-miR-154c, -199a-3p, -320a and -432 were identified to be high expressed in bovine backfat, in contrast with the patterns shown by bta-miR-1, -133a, -378 and -206 in bovine muscle tissue. [score:3]
In this paper, the expression levels of the bta-miR-1, -133a, -206 and -378 in the muscle were higher than the backfat, which indicated a role for these miRNAs in the muscle. [score:3]
In the present study, we picked out 8 significantly highly expressed miRNAs compared between AF and AM libraries, including bta-miR-199a-3p, -154c, -320a and -432 in backfat library and bta-miR-1, -133a, -206, and -378 in muscle library. [score:2]
We therefore could postulate that bta-miR-154c, -199a-3p, -320a and -432 may influence lipid metabolism and adipogenesis in backfat tissue, and bta-miR-1, -133a, -378 and -206 may contribute to the regulation of muscle growth and phenotype. [score:2]
MiR-1 and miR-133, as well as miR-206, are all muscle specific miRNAs [8]. [score:1]
The contrastive patterns were shown by bta-miR-1, bta-miR-133a, bta-miR-378 and bta-miR-206 with 9799576, 18927, 24882 and 788710 reads in AM library as opposed to 89060, 127, 2209 and 28690 reads in AF library. [score:1]
MiR-1 and miR-133 have distinct roles in modulating skeletal muscle proliferation and differentiation in cultured myoblasts in vitro and in Xenopus laevis embryos in vivo [9]. [score:1]
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4
[+] score: 31
Other miRNAs from this paper: bta-mir-29a, bta-let-7f-2, bta-mir-27a, bta-mir-320a-2, bta-mir-99a, bta-mir-125a, bta-mir-181a-2, bta-mir-27b, bta-mir-10a, bta-mir-139, bta-mir-140, bta-mir-181b-2, bta-mir-487a, bta-let-7d, bta-mir-124a-1, bta-mir-181c, bta-mir-29b-2, bta-mir-29c, bta-mir-423, bta-let-7g, bta-mir-10b, bta-let-7a-1, bta-mir-487b, bta-let-7f-1, bta-mir-122, bta-let-7i, bta-mir-25, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7e, bta-mir-195, bta-mir-34a, bta-mir-1-2, bta-mir-124a-2, bta-mir-124b, bta-mir-133a-2, bta-mir-133a-1, bta-mir-133b, bta-mir-154a, bta-mir-181d, bta-mir-184, bta-mir-206, bta-mir-29d, bta-mir-335, bta-mir-33a, bta-mir-33b, bta-mir-486, bta-mir-495, bta-mir-95, bta-mir-9-1, bta-mir-9-2, bta-mir-29e, bta-mir-29b-1, bta-mir-1271, bta-mir-1249, bta-mir-181a-1, bta-mir-181b-1, bta-mir-2284i, bta-mir-2286, bta-mir-2300a, bta-mir-2300b, bta-mir-2284s, bta-mir-2284l, bta-mir-2284j, bta-mir-2284t, bta-mir-2284d, bta-mir-2319a, bta-mir-2319b, bta-mir-2284n, bta-mir-2284g, bta-mir-2329-1, bta-mir-2329-2, bta-mir-2284p, bta-mir-2284u, bta-mir-2363-1, bta-mir-2363-2, bta-mir-2284f, bta-mir-2284a, bta-mir-2284k, bta-mir-2284c, bta-mir-2284v, bta-mir-2396, bta-mir-2285c, bta-mir-2284q, bta-mir-2404-1, bta-mir-2284m, bta-mir-2284b, bta-mir-320b, bta-mir-2284r, bta-mir-2443, bta-mir-2284h, bta-mir-2450c, bta-mir-2450b, bta-mir-2450a, bta-mir-2404-2, bta-mir-2284o, bta-mir-2484, bta-mir-2284e, bta-mir-320a-1, bta-mir-2887-1, bta-mir-2887-2, bta-mir-2284w, bta-mir-3431, bta-mir-2284x, bta-mir-3432a-1, bta-mir-3432a-2, bta-mir-574, bta-mir-2284y-1, bta-mir-2284y-2, bta-mir-2284y-3, bta-mir-154c, bta-mir-154b, bta-mir-2284y-4, bta-mir-2284y-5, bta-mir-2284y-6, bta-mir-6526-1, bta-mir-6526-2, bta-mir-503, bta-mir-2284y-7, bta-mir-6526-3, bta-mir-2284z-1, bta-mir-2284aa-1, bta-mir-2284z-3, bta-mir-2284aa-2, bta-mir-2284aa-3, bta-mir-2284z-4, bta-mir-2284z-5, bta-mir-2284z-6, bta-mir-2284z-7, bta-mir-6536-1, bta-mir-2284aa-4, bta-mir-6536-2, bta-mir-2284z-2, bta-mir-133c, bta-mir-2284ab, bta-mir-2284ac, bta-mir-3432b, bta-mir-2450d
In addition, miR-206, miR-1, and miR-320 were up-regulated during MDSC differentiation; miR-495, miR-133b, and miR-487 were down-regulated in MDSC-D1 and upregulated in MDSC-D3. [score:10]
The results showed that miR-29a, miR-27a, and let-7i were highly expressed in MDSC-P; in contrast, miR-320, miR-1, and miR-206 were highly expressed in MDSC-D3. [score:5]
miR-1 and miR-206 were upregulated during satellite cell differentiation and promoted myogenesis [28, 33], whereas miR-133 was involved primarily in the promotion of proliferation [9]. [score:4]
The ubiquitously expressed let-7 members, let-7a-5p, let-7f, and let-7b, followed, and miR-1 had the fifth greatest count. [score:3]
Based on abundance levels, miR-206 and miR-1 were considered to have a greater role in MDSC differentiation than miR-133 or their targets could be more abundant. [score:2]
For example, compared with the proliferation stages (MDSC-P), the expression levels of miR-2443, miR-423-5p, miR-181a, miR-10a, and miR-206 were higher in MDSC-D1, and the pattern was the same as that of miR-139, miR-1, miR-95, miR-206, and miR-133a in MDSC-D3. [score:2]
These data suggested that miR-1 plays different roles from miR-206 in muscle differentiation; miR-1 could affect the regulation of genes that require inactivation in later stages, while miR-206 could have a more constant role in repressing genes immediately after differentiation. [score:2]
For example, miR-1 and miR-206 could promote the differentiation of myoblasts, whereas miR-133 could promote cell proliferation [8– 10]. [score:1]
In addition, both miR-206 and miR-1 promoted differentiation [9], which suggested that these two miRNAs might have a greater effect than miR-133 in muscle satellite cell differentiation [35]. [score:1]
For example, the let-7, miR-25, miR-1, miR-10, miR-8, miR-9, and miR-124 families have been found in 68, 68, 69, 70, 71, 72, and 73 species, respectively, while the miR-2484, miR-2300, miR-2319, miR-2329, miR-2363, miR-2404, miR-2450, miR-2887, miR-3432, miR-2604, miR-6526, and miR-6536 families have only been detected in cattle (Additional file 8). [score:1]
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5
[+] score: 27
However, the over -expression of miR-1-3p, which has three putative target sequences in ELOVL6 3’UTR, led to a significant reduction in the expression of ELOVL6, suggesting that the 3’UTR of this gene is available to miRNA regulation. [score:8]
To ensure that the mimics were functional in the cells and able to regulating their target, miR-1-3p, a miRNA that regulates the mRNA level of TWF1 (twinfilin actin binding protein 1) was transfected too. [score:5]
The mirVana™ miRNA mimic miR-1-3p (Ambion™) was used as a positive control and its target TWF1 was quantified to determine whether the mimic was active in the cells. [score:3]
To ensure the accessibility of ELOVL6 3’UTR, the expression of this gene was quantified in both mock -transfected cells and those transfected with miR-1-3p mimics. [score:3]
ELOVL6 expression after transfection of miR-20a-5p and miR-142-5p (B) or miR-1-3p (C). [score:3]
A significant reduction in TWF1 expression was found in BME-UV1 cells transfected with miR-1-3p when compared with mock -transfected cells (data not shown). [score:2]
Furthermore, three binding sites for miR-1-3p are also present in the 3’UTR of ELOVL6 (Fig 4). [score:1]
0185511.g004 Fig 4Predicted binding site of miR-20a-5p, miR-142-5p and miR-1-3p in the 3’UTR of ELOVL6. [score:1]
Predicted binding site of miR-20a-5p, miR-142-5p and miR-1-3p in the 3’UTR of ELOVL6. [score:1]
[1 to 20 of 9 sentences]
6
[+] score: 26
Upregulation of miR-1 also occurs during the development of obesity in mice [64], whereas blocking miR-193b inhibits brown adipocyte adipogenesis by significantly inducing the expression of myogenic markers [65]. [score:9]
A number of miRNAs related to lipid metabolism and adipogenesis were differentially expressed between bulls and steers, which included downregulated miRNAs, such as miR-224, miR-33a, miR-1, and miR-141, and upregulated miRNAs, such as miR-10b, miR-193, and miR-181b. [score:9]
Regarding qRT-PCR used validate relative gene expression of the 8 selected miRNAs, we showed in Fig 5E that miR-let-7i, miR-2305 and miR-2890 were upregulated and the expression of miR-874, miR-1, miR-106b, miR-1296 and miR-362-5p decreased in steers. [score:8]
[1 to 20 of 3 sentences]
7
[+] score: 25
In eggs there are five abundantly expressed miRNAs including rmi-miR-1, rmi-miR-310/miR-92, rmi-miR-279, rmi-miR-275 and rmi-miR-71 that accounted for 80.6% of the total amount of miRNA transcripts (Figure 3A and Additional file 3), while in all other life stages miR-1 was the most abundantly expressed miRNA (Figure 3). [score:5]
It remains to be elucidated if blood -mediated oxidative stress in R. microplus contributes to the increased expression level of rmi-miR-1 in females and if this miRNA exercise pro-apoptotic activities similar to its X. laevis miR-1 counterpart [38] that would ultimately facilitate egg laying. [score:3]
MiR-133 and miR-1 are preferentially expressed in cardiac and skeletal muscles in Xenopus laevis [39] both have opposing effects, with miR-1 being rather pro-apoptotic [38]. [score:3]
Our results validated the abundant expression of rmi-miR-1 in eggs, frustrated larvae and female samples. [score:3]
Although rmi-miR-1 is the most abundantly expressed miRNA in cattle tick larvae (Figure 3B), we found eight other miRNAs, including rmi-miR-133, rmi-miR-87, rmi-miR-10, and rmi-miR-252, that had a higher fold-change ratio in miRNA transcript levels as compared to that in eggs suggesting that these miRNAs may play a role during larval development (Table 3 and Additional file 6). [score:3]
Similar to what we observed for life stage samples, rmi-miR-1 was the most abundantly expressed miRNA in all sampled organs accounting for ~81-83% of the identified R. microplus miRNA transcripts in ovaries and gut, and for 43.1% of the miRNA transcripts in salivary glands (Additional file 11). [score:3]
Complete list of miRNAs and statistics are shown in Additional file 6. Similar to the observation in larval stages, rmi-miR-1 was vastly abundant in adult ticks accounting for 87.4% and 86.2% of miRNA transcripts in females and males, respectively (Figure 3C and 3D). [score:1]
This notion correlates with the observed significant up regulation of rmi-miR-1 in semi-engorged females as compared to males (Table 5). [score:1]
Complete list of miRNAs and statistics are shown in Additional file 6. Similar to the observation in larval stages, rmi-miR-1 was vastly abundant in adult ticks accounting for 87.4% and 86.2% of miRNA transcripts in females and males, respectively (Figure 3C and 3D). [score:1]
Interestingly, miR-1 level was shown to significantly increase in response to oxidative stress [38]. [score:1]
These included rmi-let-7a, rmi-miR-1, rmi-miR-7, rmi-miR-12, and rmi-miR-124. [score:1]
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8
[+] score: 19
Dai et al. [27] confirmed the mechanism in which miR-1 and miR-206 positively regulate bovine skeletal muscle satellite cell myogenic differentiation via the downregulation of PAX7 and HDAC4. [score:5]
MiR-1 and miR-206 were also found to inhibit PAX3 [28] and NOTCH3 [29] allowing differentiation to proceed. [score:3]
A few high-throughput studies have confirmed some of the identified miRNAs (miR-1, miR-128, miR-133a, miR-133b, miR-206, miR-222, and miR-503) as common for skeletal muscle development in mouse, human, pig, common carp [11], and cattle [25]. [score:2]
Cell culture experiments have shown that miR-1 and miR-206 promote muscle cell differentiation, whereas miR-133 enhances cell proliferation. [score:1]
On the basis of a functional analysis, we assigned 9 miRNA as molecules responsible for differentiation progression (miR-1, -128a, -133a, -133b, -139, -206, -222, -486, and -503). [score:1]
Among them, 9 miRNA were classified as involved in myoblast differentiation (miR-1, -128, -133a, -133b, -139, -206, -222, -486, and -503). [score:1]
According to the aforementioned database, a majority of the analyzed molecules were engaged in the myogenesis process (miR-1, -29b, -128, -133a, -133b, -139, -206, -222, -449a, -486, and -503). [score:1]
Among them were muscle-specific myomiRs miR-1, -133a, -206, and miR-486 and non-myomiRs such as miR-9-5p, -128, -139, -145, -503, and -660. [score:1]
The combined action of miR-133 and myomiRs (miR-1 and -206) induces MYOD1, PAX7, and myogenin causing myoblast differentiation [33]. [score:1]
Among them, the well-known muscle-specific miRNAs miR-1, -133a, -133b, and -206; also called myomiRs [11]. [score:1]
It is plausible that in HER/LIM cells, the differentiation progression is accelerated via similar mechanisms involving miR-1, miR-133, miR-206, and myogenin, resulting possibly in enhanced myotube formation observed in the primary cultures of the skeletal muscle with a HER/LIM origin (Fig. 1). [score:1]
Moreover, some of identified molecules were also annotated as taking part in myoblast proliferation (miR-1, -128, -133a, -133b, -139, and -206); myocyte function (miR-31, -133a, -145, and -222); myoblast fusion (miR-206, -222, and -486); and satellite cell activation (miR-1 and -206) (Fig.   3). [score:1]
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[+] score: 15
Interestingly, in human fetal skeletal muscle, miR-1 and miR-133a expression were found to increase during the late stages of development [39]. [score:4]
Our results revealed that miR-1 and miR-133a expression is increased in the longissimus dorsi muscle of the HIGH diet fetuses. [score:3]
Only significant (P < 0.05) correlations are reported Analysis of microRNA 1 (miR-1) and microRNA 133a (miR-133a) expression also revealed that both microRNAs abundance was lower in the LD muscle of LOW fetuses (P < 0.05, Fig. 5). [score:3]
Only significant (P < 0.05) correlations are reported Analysis of microRNA 1 (miR-1) and microRNA 133a (miR-133a) expression also revealed that both microRNAs abundance was lower in the LD muscle of LOW fetuses (P < 0.05, Fig. 5). [score:3]
The miRNA miR-1 and miR-133a are known to modulate proliferation and differentiation in skeletal muscle [38]. [score:1]
Fig. 5microRNA abundance for miR-1 and miR-133a in the LD muscle of fetal calves (n = 22) exposed to a high or low diet in utero during the 2nd half of gestation. [score:1]
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[+] score: 10
It has been reported that muscle-specific miRNAs, miR-206 and miR-499, are upregulated and miR-1, miR-133a, and miR-133b are downregulated in extraocular muscles compared to limb muscle, concluding that a miRNA network contributes to the extraocular muscles by regulating posttranscriptional expression of genes involved in structure, signaling, metabolism, angiogenesis, myogenesis, and regeneration in extraocular muscles [7]. [score:9]
miR-1 and miR-133 have distinct roles in modulating skeletal muscle proliferation and differentiation in cultured myoblast in vitro and in Xenopus laevis embryos in vivo[9]. [score:1]
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[+] score: 10
When cows were fed AL diet, expression of three ruminal miRNAs including miR-125-5p, -130a, -2376, three duodenal miRNAs including miR-2483-5p, -2286l, -2336, two hepatic miRNAs including miR-199a-3p, -2399-5p and fourteen mammary gland miRNAs such as miR-196a, -205 was positively correlated with feed (R ranged from 0.81 ~ 0.99, P < 0.05) and N efficiency (R ranged from 0.81 ~ 0.98, P < 0.05), whereas the expression ruminal miR-1296, duodenal miR-6123, two jejunal miRNAs including miR-30b-3p, -652, five hepatic miRNAs including miR-1, -2285e, -421, -455-3p, -671, and mammary gland miR-99b was negatively correlated with feed (R ranged from −0.82 ~ −0.94, P < 0.05) and N efficiency (R ranged from −0.84 ~ −0.92, P < 0.05) (Table S6). [score:5]
The phosphorylation of L-amino acid (FDR = 2.62E-05, n = 13, such as miR-1) was targeted by liver negatively associated miRNAs. [score:3]
Compared with low quality forage (CS and RS), high quality forage diet (AL) can potentially change AAs uptake by changing the expression of miRNAs associated with dairy efficiency (P < 0.05, Fig. 7) in rumen (miR-378 and -345-3p), duodenum (miR-199b), jejunum (miR-330, -425-3p, -2285p, -197, 2419-3p and 2419-5p), liver (miR-1), and mammary gland (miR-2285t and -2443), and miRNA driven phosphorylation of AAs in duodenum (miR-199b, -328, and -423-5p) and jejunum (miR-197, -2419-3p, and -2419-5p). [score:2]
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[+] score: 10
In addition, the expression of myomiRs important for the myogenic process and induced during myoblast proliferation (i. e; miR-1, miR-206, miR-133a) are significantly decreased in C2C12. [score:3]
In addition, the expression of myomiRs important in the myogenic process, which are induced during myoblast proliferation (i. e; miR-1, miR-206, miR-133a [18]), were significantly decreased in C2C12 grown in SEDM, confirming exit from the proliferation step and entrance in the differentiation process (Fig.   4). [score:3]
Quantification of miR-1, miR-133a and miR-206 in C2C12, grown either in CM (white) or in EVs -depleted proliferation media (black). [score:1]
As shown on Fig.   8, miR-133a and miR-1, which are important for myoblast proliferation [21] were detected by PCR in FBS-EVs. [score:1]
Indeed, we have found 675 bovine miRNAs which are predicted to bind the murine myogenin 3’UTR region (Additional file 2: Table S2), including miR-1 and miR-133a. [score:1]
Interestingly, 2 miRNAs involved in myogenesis are detected in FBS-EVs (i. e. ; miR-133a and miR-1). [score:1]
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[+] score: 10
We have identified several miRNAs that are up-regulated in MSTN [-/-] pigs, and these miRNAs have previously been shown to be involved in myoblast development, including the well-known miR-1, miR-206 [13, 15], and miR-486 [26] (Figure 1A). [score:5]
Chen et al. [13– 15] previously reported that miR-1 and miR-206 can promote the differentiation of skeletal muscle satellite cells and significantly inhibit their proliferation by decreasing the expression level of Pax7. [score:5]
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[+] score: 9
Among the likely more inhibited, the miRNA29b has strong epigenetic effects on the expression of several lactogenic genes [62], let-7a-5p is highly expressed in cow mammary [63], and miRNA1 has a strong control in the expression of β-lactoglobulin [64]. [score:9]
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[+] score: 8
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-mir-18a, hsa-mir-21, hsa-mir-23a, hsa-mir-26a-1, hsa-mir-30a, hsa-mir-99a, hsa-mir-103a-2, hsa-mir-103a-1, mmu-mir-1a-1, mmu-mir-23b, mmu-mir-30a, mmu-mir-99a, mmu-mir-126a, mmu-mir-9-2, mmu-mir-133a-1, mmu-mir-138-2, hsa-mir-192, mmu-mir-204, mmu-mir-122, hsa-mir-204, hsa-mir-1-2, hsa-mir-23b, hsa-mir-122, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-138-2, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-126, hsa-mir-138-1, mmu-mir-192, mmu-let-7a-1, mmu-let-7a-2, mmu-mir-18a, mmu-mir-21a, mmu-mir-23a, mmu-mir-26a-1, mmu-mir-103-1, mmu-mir-103-2, hsa-mir-1-1, mmu-mir-1a-2, mmu-mir-26a-2, mmu-mir-9-1, mmu-mir-9-3, mmu-mir-138-1, hsa-mir-26a-2, hsa-mir-376c, hsa-mir-381, mmu-mir-381, mmu-mir-133a-2, rno-let-7a-1, rno-let-7a-2, rno-mir-9a-1, rno-mir-9a-3, rno-mir-9a-2, rno-mir-18a, rno-mir-21, rno-mir-23a, rno-mir-23b, rno-mir-26a, rno-mir-30a, rno-mir-99a, rno-mir-103-2, rno-mir-103-1, rno-mir-122, rno-mir-126a, rno-mir-133a, rno-mir-138-2, rno-mir-138-1, rno-mir-192, rno-mir-204, mmu-mir-411, hsa-mir-451a, mmu-mir-451a, rno-mir-451, hsa-mir-193b, rno-mir-1, mmu-mir-376c, rno-mir-376c, rno-mir-381, hsa-mir-574, hsa-mir-652, hsa-mir-411, bta-mir-26a-2, bta-mir-103-1, bta-mir-16b, bta-mir-18a, bta-mir-21, bta-mir-99a, bta-mir-126, mmu-mir-652, bta-mir-138-2, bta-mir-192, bta-mir-23a, bta-mir-30a, bta-let-7a-1, bta-mir-122, bta-mir-23b, bta-let-7a-2, bta-let-7a-3, bta-mir-103-2, bta-mir-204, mmu-mir-193b, mmu-mir-574, rno-mir-411, rno-mir-652, mmu-mir-1b, hsa-mir-103b-1, hsa-mir-103b-2, bta-mir-1-2, bta-mir-133a-2, bta-mir-133a-1, bta-mir-138-1, bta-mir-193b, bta-mir-26a-1, bta-mir-381, bta-mir-411a, bta-mir-451, bta-mir-9-1, bta-mir-9-2, bta-mir-376c, bta-mir-1388, rno-mir-9b-3, rno-mir-9b-1, rno-mir-126b, rno-mir-9b-2, hsa-mir-451b, bta-mir-574, bta-mir-652, mmu-mir-21b, mmu-mir-21c, mmu-mir-451b, bta-mir-411b, bta-mir-411c, mmu-mir-126b, rno-mir-193b, mmu-mir-9b-2, mmu-mir-9b-1, mmu-mir-9b-3
Comparison of miRNA expression profiles among tissues revealed that very few miRNAs expression was tissue specific (e. g., miR-9, -124 in brain, miR-122 in liver, miR-1, miR-133a and -206 in muscle). [score:5]
Our comparison of miRNA expression across 11 tissues from bovine revealed a few tissue specific miRNAs: miR-9, -124 in brain, miR-122 in liver, miR-1, miR-133a and -206 in muscle, which had been previously reported in mouse and human [13, 27]. [score:3]
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[+] score: 7
14/26s highly expressed in the HM fraction (let-7d-5p, miR-103a-3p, miR-142-3p, miR-17-5p, miR-18a-5p, miR-196a-5p, miR-20a-5p, miR-24-1-5p, miR-26a-5p, miR-301a-3p, miR-30b-5p, miR-34b-5p, miR-34c-5p, miR-378a-3p) and 7/14s highly expressed in the LM fraction (miR-10b-5p, miR-122-5p, miR-1-3p, miR-184, miR-486-5p, miR-7-5p, miR-99b-5p) were predicted to target 327 and 281 experimentally observed genes, respectively. [score:7]
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Recent studies of muscle-specific miRNAs such as miR-1, miR-133a/b, miR-206, and miR-208b have indicated their roles in the development or specification of skeletal muscle [5– 7]. [score:2]
Muscle-specific miRNAs such as miR-1, miR-133a, miR-206, miR-208b, and miR-499 were not significantly detected in the plasma exosomes across all samples (i. e., grazing and housed during experiment) except for miR-486 (0.18%) and a trace of miR-133b (< 0.001%). [score:1]
In the present study, among the 231 exosomal miRNAs detected in the cattle plasma, muscle-enriched miR-486 and a trace of miR133b were detected, but miR-1, miR-133a, miR-206, miR-208b, and miR-499 were not detected. [score:1]
Moreover, circulation levels of miR-1, miR-133a/b, and/or miR-208b significantly increased during early recovery of muscle-damaging downhill walking in healthy subjects [31] and in the 3-h period following a non-muscle-damaging single bout of cycling [32], suggesting that the profile of c-miRNAs are affected by the mode and intensity of the exercise. [score:1]
Serum levels of miR-1, miR-133a/b, and miR-206 are increased in patients of human Duchenne muscular dystrophy [18, 19] and of rhabdomyosarcoma tumor [20], and that the miR-21 level is affected in various types of cancers [21– 24]. [score:1]
Indeed, muscle-specific miR-1, miR-133a/b, miR-206, and/or miR-208b in circulation have been shown to be changed by muscle-damaging downhill walking [31] and marathon running in humans [39, 57]. [score:1]
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[+] score: 6
Other miRNAs from this paper: mmu-mir-1a-1, mmu-mir-127, mmu-mir-134, mmu-mir-136, mmu-mir-154, mmu-mir-181a-2, mmu-mir-143, mmu-mir-196a-1, mmu-mir-196a-2, mmu-mir-21a, rno-mir-329, mmu-mir-329, mmu-mir-1a-2, mmu-mir-181a-1, mmu-mir-181b-1, mmu-mir-181c, mmu-mir-375, mmu-mir-379, mmu-mir-181b-2, rno-mir-21, rno-mir-127, rno-mir-134, rno-mir-136, rno-mir-143, rno-mir-154, rno-mir-181c, rno-mir-181a-2, rno-mir-181b-1, rno-mir-181b-2, rno-mir-196a, rno-mir-181a-1, mmu-mir-196b, rno-mir-196b-1, mmu-mir-412, mmu-mir-370, oar-mir-431, oar-mir-127, oar-mir-432, oar-mir-136, mmu-mir-431, mmu-mir-433, rno-mir-431, rno-mir-433, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-136, ssc-mir-196a-2, ssc-mir-21, rno-mir-370, rno-mir-412, rno-mir-1, mmu-mir-485, mmu-mir-541, rno-mir-541, rno-mir-493, rno-mir-379, rno-mir-485, mmu-mir-668, bta-mir-21, bta-mir-181a-2, bta-mir-127, bta-mir-181b-2, bta-mir-181c, mmu-mir-181d, mmu-mir-493, rno-mir-181d, rno-mir-196c, rno-mir-375, mmu-mir-1b, bta-mir-1-2, bta-mir-134, bta-mir-136, bta-mir-143, bta-mir-154a, bta-mir-181d, bta-mir-196a-2, bta-mir-196a-1, bta-mir-196b, bta-mir-329a, bta-mir-329b, bta-mir-370, bta-mir-375, bta-mir-379, bta-mir-412, bta-mir-431, bta-mir-432, bta-mir-433, bta-mir-485, bta-mir-493, bta-mir-541, bta-mir-181a-1, bta-mir-181b-1, ssc-mir-1, ssc-mir-181a-1, mmu-mir-432, rno-mir-668, ssc-mir-143, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181d, ssc-mir-196b-1, ssc-mir-127, ssc-mir-432, oar-mir-21, oar-mir-181a-1, oar-mir-493, oar-mir-433, oar-mir-370, oar-mir-379, oar-mir-329b, oar-mir-329a, oar-mir-134, oar-mir-668, oar-mir-485, oar-mir-154a, oar-mir-154b, oar-mir-541, oar-mir-412, mmu-mir-21b, mmu-mir-21c, ssc-mir-196a-1, ssc-mir-196b-2, ssc-mir-370, ssc-mir-493, bta-mir-154c, bta-mir-154b, oar-mir-143, oar-mir-181a-2, chi-mir-1, chi-mir-127, chi-mir-134, chi-mir-136, chi-mir-143, chi-mir-154a, chi-mir-154b, chi-mir-181b, chi-mir-181c, chi-mir-181d, chi-mir-196a, chi-mir-196b, chi-mir-21, chi-mir-329a, chi-mir-329b, chi-mir-379, chi-mir-412, chi-mir-432, chi-mir-433, chi-mir-485, chi-mir-493, rno-mir-196b-2, bta-mir-668, ssc-mir-375
For example, miR-273 and the lys-6 miRNA have been shown to be involved in the development of the nervous system in nematode worm [3]; miR-430 was reported to regulate the brain development of zebrafish [4]; miR-181 controlled the differentiation of mammalian blood cell to B cells [5]; miR-375 regulated mammalian islet cell growth and insulin secretion [6]; miR-143 played a role in adipocyte differentiation [7]; miR-196 was found to be involved in the formation of mammalian limbs [8]; and miR-1 was implicated in cardiac development [9]. [score:6]
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[+] score: 6
Sun Y. Ge Y. Drnevich J. Zhao Y. Band M. Chen J. Mammalian target of rapamycin regulates miRNA-1 and follistatin in skeletal myogenesis J. Cell Biol. [score:4]
Chen J. -F. Man del E. M. Thomson J. M. Wu Q. Callis T. E. Hammond S. M. Conlon F. L. Wang D. Z. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation Nat. [score:1]
Muscle-specific miRNAs, such as miR-1, miR-206 and miR-133a, contribute to myoblast differentiation [30, 31, 32, 33]. [score:1]
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[+] score: 6
Other miRNAs from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-mir-15a, hsa-mir-17, hsa-mir-18a, hsa-mir-19a, hsa-mir-19b-1, hsa-mir-19b-2, hsa-mir-20a, hsa-mir-22, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-25, hsa-mir-27a, hsa-mir-29a, hsa-mir-30a, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-98, hsa-mir-99a, hsa-mir-29b-1, hsa-mir-29b-2, hsa-mir-106a, hsa-mir-148a, hsa-mir-30c-2, hsa-mir-30d, hsa-mir-10a, hsa-mir-10b, hsa-mir-181a-2, hsa-mir-181b-1, hsa-mir-181c, hsa-mir-182, hsa-mir-181a-1, hsa-mir-221, hsa-let-7g, hsa-let-7i, hsa-mir-1-2, hsa-mir-15b, hsa-mir-27b, hsa-mir-30b, hsa-mir-130a, hsa-mir-152, hsa-mir-191, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-185, hsa-mir-193a, hsa-mir-320a, hsa-mir-200c, hsa-mir-1-1, hsa-mir-181b-2, hsa-mir-29c, hsa-mir-30c-1, hsa-mir-99b, hsa-mir-130b, hsa-mir-30e, hsa-mir-363, hsa-mir-374a, hsa-mir-375, hsa-mir-378a, hsa-mir-148b, hsa-mir-331, hsa-mir-339, hsa-mir-423, hsa-mir-20b, hsa-mir-491, hsa-mir-193b, hsa-mir-181d, hsa-mir-92b, hsa-mir-320b-1, hsa-mir-320c-1, hsa-mir-320b-2, hsa-mir-378d-2, bta-mir-29a, bta-let-7f-2, bta-mir-148a, bta-mir-18a, bta-mir-20a, bta-mir-221, bta-mir-27a, bta-mir-30d, bta-mir-320a-2, bta-mir-99a, bta-mir-181a-2, bta-mir-27b, bta-mir-30b, bta-mir-106a, bta-mir-10a, bta-mir-15b, bta-mir-181b-2, bta-mir-193a, bta-mir-20b, bta-mir-30e, bta-mir-92a-2, bta-mir-98, bta-let-7d, bta-mir-148b, bta-mir-17, bta-mir-181c, bta-mir-191, bta-mir-200c, bta-mir-22, bta-mir-29b-2, bta-mir-29c, bta-mir-423, bta-let-7g, bta-mir-10b, bta-mir-24-2, bta-mir-30a, bta-let-7a-1, bta-let-7f-1, bta-mir-30c, bta-let-7i, bta-mir-25, bta-mir-363, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7e, bta-mir-15a, bta-mir-19a, bta-mir-19b, bta-mir-331, bta-mir-374a, bta-mir-99b, hsa-mir-374b, hsa-mir-320d-1, hsa-mir-320c-2, hsa-mir-320d-2, bta-mir-1-2, bta-mir-130a, bta-mir-130b, bta-mir-152, bta-mir-181d, bta-mir-182, bta-mir-185, bta-mir-24-1, bta-mir-193b, bta-mir-29d, bta-mir-30f, bta-mir-339a, bta-mir-374b, bta-mir-375, bta-mir-378-1, bta-mir-491, bta-mir-92a-1, bta-mir-92b, bta-mir-9-1, bta-mir-9-2, bta-mir-29e, bta-mir-29b-1, bta-mir-181a-1, bta-mir-181b-1, bta-mir-320b, bta-mir-339b, bta-mir-19b-2, bta-mir-320a-1, bta-mir-193a-2, bta-mir-378-2, hsa-mir-378b, hsa-mir-320e, hsa-mir-378c, bta-mir-148c, hsa-mir-374c, hsa-mir-378d-1, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-378j, bta-mir-378b, bta-mir-378c, bta-mir-378d, bta-mir-374c, bta-mir-148d
In addition, many miRNA families showed low expression (count number <100) in milk exosomes, such as the miR-1, miR-130, miR-17, miR-10, miR-29, miR-374, mir-9, miR-15 and miR-491 families (Figure 12F), which are routinely expressed in specific tissues [53– 56]. [score:5]
In our study, 8 miRNA families (let-7, mir-1, mir-17, mir-181, mir-148, mir-30, mir-92 and mir-99) were found with at least 3 members among all exosome miRNAs. [score:1]
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21
[+] score: 5
Other miRNAs from this paper: bta-let-7f-2, bta-mir-101-2, bta-mir-103-1, bta-mir-21, bta-mir-27a, bta-mir-30d, bta-mir-320a-2, bta-mir-199a-1, bta-mir-27b, bta-mir-30b, bta-mir-107, bta-mir-140, bta-mir-30e, bta-let-7d, bta-mir-124a-1, bta-mir-199b, bta-mir-200a, bta-mir-200c, bta-let-7g, bta-mir-30a, bta-mir-200b, bta-let-7a-1, bta-let-7f-1, bta-mir-122, bta-mir-30c, bta-let-7i, bta-mir-25, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7e, bta-mir-103-2, bta-mir-1-2, bta-mir-101-1, bta-mir-124a-2, bta-mir-124b, bta-mir-133a-2, bta-mir-133a-1, bta-mir-143, bta-mir-152, bta-mir-154a, bta-mir-185, bta-mir-199a-2, bta-mir-206, bta-mir-30f, bta-mir-335, bta-mir-33a, bta-mir-33b, bta-mir-370, bta-mir-378-1, bta-mir-432, bta-mir-9-1, bta-mir-9-2, bta-mir-1224, bta-mir-376b, bta-mir-376d, bta-mir-376c, bta-mir-376a, bta-mir-1839, bta-mir-1185, bta-mir-2284i, bta-mir-2285a, bta-mir-2284s, bta-mir-2285d, bta-mir-2284l, bta-mir-2284j, bta-mir-2284t, bta-mir-2285b-1, bta-mir-2284d, bta-mir-2284n, bta-mir-2284g, bta-mir-199c, bta-mir-2284p, bta-mir-2284u, bta-mir-2363-1, bta-mir-2363-2, bta-mir-2284f, bta-mir-2284a, bta-mir-2284k, bta-mir-2284c, bta-mir-2284v, bta-mir-2285c, bta-mir-2284q, bta-mir-2284m, bta-mir-2284b, bta-mir-320b, bta-mir-2284r, bta-mir-2284h, bta-mir-2284o, bta-mir-2284e, bta-mir-320a-1, bta-mir-378-2, bta-mir-2284w, bta-mir-2284x, bta-mir-3432a-1, bta-mir-3432a-2, bta-mir-3604-1, bta-mir-3604-2, bta-mir-2284y-1, bta-mir-2285e-1, bta-mir-2285e-2, bta-mir-2285f-1, bta-mir-2285f-2, bta-mir-2285g-1, bta-mir-2285h, bta-mir-2285i, bta-mir-2285j-1, bta-mir-2285j-2, bta-mir-2285k-1, bta-mir-2285l, bta-mir-2285o-1, bta-mir-2285o-2, bta-mir-2285n-1, bta-mir-2285n-2, bta-mir-2285p, bta-mir-2285m-1, bta-mir-2285m-2, bta-mir-2284y-2, bta-mir-378b, bta-mir-2285n-3, bta-mir-2285n-4, bta-mir-2284y-3, bta-mir-154c, bta-mir-376e, bta-mir-154b, bta-mir-2285o-3, bta-mir-2285o-4, bta-mir-2285m-3, bta-mir-378c, bta-mir-2284y-4, bta-mir-2284y-5, bta-mir-2284y-6, bta-mir-2285m-4, bta-mir-2285o-5, bta-mir-2285m-5, bta-mir-2285n-5, bta-mir-2285n-6, bta-mir-6526-1, bta-mir-6526-2, bta-mir-503, bta-mir-2284y-7, bta-mir-6526-3, bta-mir-2285n-7, bta-mir-2284z-1, bta-mir-2284aa-1, bta-mir-2285k-2, bta-mir-2284z-3, bta-mir-2284aa-2, bta-mir-2284aa-3, bta-mir-2285k-3, bta-mir-2285k-4, bta-mir-2284z-4, bta-mir-2285k-5, bta-mir-2284z-5, bta-mir-2284z-6, bta-mir-2284z-7, bta-mir-6536-1, bta-mir-2284aa-4, bta-mir-6536-2, bta-mir-2285q, bta-mir-2285r, bta-mir-2285s, bta-mir-2285t, bta-mir-2285b-2, bta-mir-2285v, bta-mir-2284z-2, bta-mir-2285g-2, bta-mir-2285g-3, bta-mir-2285af-1, bta-mir-2285af-2, bta-mir-2285y, bta-mir-2285w, bta-mir-2285x, bta-mir-2285z, bta-mir-2285u, bta-mir-2285aa, bta-mir-2285ab, bta-mir-2284ab, bta-mir-2285ac, bta-mir-2285ad, bta-mir-2284ac, bta-mir-2285ae, bta-mir-378d, bta-mir-3432b, bta-mir-2285ag, bta-mir-2285ah, bta-mir-2285ai, bta-mir-2285aj, bta-mir-2285ak, bta-mir-2285al, bta-mir-2285am, bta-mir-2285ar, bta-mir-2285as-1, bta-mir-2285as-2, bta-mir-2285as-3, bta-mir-2285at-1, bta-mir-2285at-2, bta-mir-2285at-3, bta-mir-2285at-4, bta-mir-2285au, bta-mir-2285av, bta-mir-2285aw, bta-mir-2285ax-1, bta-mir-2285ax-2, bta-mir-2285ax-3, bta-mir-2285ay, bta-mir-2285az, bta-mir-2285an, bta-mir-2285ao-1, bta-mir-2285ao-2, bta-mir-2285ap, bta-mir-2285ao-3, bta-mir-2285aq-1, bta-mir-2285aq-2, bta-mir-2285ba-1, bta-mir-2285ba-2, bta-mir-2285bb, bta-mir-2285bc, bta-mir-2285bd, bta-mir-2285be, bta-mir-2285bf-1, bta-mir-2285bf-2, bta-mir-2285bf-3, bta-mir-2285bg, bta-mir-2285bh, bta-mir-2285bi-1, bta-mir-2285bi-2, bta-mir-2285bj-1, bta-mir-2285bj-2, bta-mir-2285bk, bta-mir-2285bl, bta-mir-2285bm, bta-mir-2285bn, bta-mir-2285bo, bta-mir-2285bp, bta-mir-2285bq, bta-mir-2285br, bta-mir-2285bs, bta-mir-2285bt, bta-mir-2285bu-1, bta-mir-2285bu-2, bta-mir-2285bv, bta-mir-2285bw, bta-mir-2285bx, bta-mir-2285by, bta-mir-2285bz, bta-mir-2285ca, bta-mir-2285cb, bta-mir-2285cc, bta-mir-2285cd, bta-mir-2285ce, bta-mir-2285cf, bta-mir-2285cg, bta-mir-2285ch, bta-mir-2285ci, bta-mir-2285cj, bta-mir-2285ck, bta-mir-2285cl, bta-mir-2285cm, bta-mir-2285cn, bta-mir-2285co, bta-mir-2285cp, bta-mir-2285cq, bta-mir-2285cr-1, bta-mir-2285cr-2, bta-mir-2285cs, bta-mir-2285ct, bta-mir-2285cu, bta-mir-2285cv-1, bta-mir-2285cv-2, bta-mir-2285cw-1, bta-mir-2285cw-2, bta-mir-2285cx, bta-mir-2285cy, bta-mir-2285cz, bta-mir-2285da, bta-mir-2285db, bta-mir-2285dc, bta-mir-2285dd, bta-mir-2285de, bta-mir-2285df, bta-mir-2285dg, bta-mir-2285dh, bta-mir-2285di, bta-mir-2285dj, bta-mir-2285dk, bta-mir-2285dl-1, bta-mir-2285dl-2, bta-mir-2285dm
In the muscle, bta-let-7a/b/f, bta-miR-1, and bta- miR-206 were the dominant expressed miRNAs, with more than 100,000 reads. [score:3]
For example, let-7, miR-1, miR-25, miR-9, and miR-25 families have been found in 68, 69, 68, 72, and 68 species, respectively, while miR-2363, miR-3432, miR-3604, miR-6526, and miR-6536 families have only been detected in bos taurus (Table S5). [score:1]
In cattle, miR-9 and miR-124 in the brain, miR-122 in the liver, and miR-1, miR-133a, and miR-206 in muscle are all tissue-specific [27]. [score:1]
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[+] score: 5
Other miRNAs from this paper: hsa-let-7f-1, hsa-let-7f-2, hsa-mir-20a, hsa-mir-21, hsa-mir-26a-1, hsa-mir-34a, hsa-mir-182, hsa-mir-210, hsa-mir-215, hsa-mir-221, hsa-mir-1-2, hsa-mir-15b, hsa-mir-122, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-141, hsa-mir-144, hsa-mir-127, hsa-mir-1-1, hsa-mir-34b, hsa-mir-34c, hsa-mir-26a-2, hsa-mir-375, hsa-mir-133b, hsa-mir-20b, hsa-mir-429, hsa-mir-451a, hsa-mir-486-1, hsa-mir-802, bta-mir-26a-2, bta-let-7f-2, bta-mir-16b, bta-mir-20a, bta-mir-21, bta-mir-221, bta-mir-34b, bta-mir-127, bta-mir-15b, bta-mir-20b, bta-mir-215, bta-mir-210, bta-let-7f-1, bta-mir-122, bta-mir-34c, bta-mir-34a, bta-mir-1-2, bta-mir-133a-2, bta-mir-133a-1, bta-mir-133b, bta-mir-141, bta-mir-144, bta-mir-16a, bta-mir-182, bta-mir-26a-1, bta-mir-375, bta-mir-429, bta-mir-451, bta-mir-486, bta-mir-2285a, bta-mir-2285d, bta-mir-2285b-1, bta-mir-2376, bta-mir-2285c, bta-mir-1388, bta-mir-3431, hsa-mir-451b, bta-mir-2285e-1, bta-mir-2285e-2, bta-mir-2285f-1, bta-mir-2285f-2, bta-mir-2285g-1, bta-mir-2285h, bta-mir-2285i, bta-mir-2285j-1, bta-mir-2285j-2, bta-mir-2285k-1, bta-mir-2285l, bta-mir-6119, bta-mir-2285o-1, bta-mir-2285o-2, bta-mir-2285n-1, bta-mir-2285n-2, bta-mir-2285p, bta-mir-2285m-1, bta-mir-2285m-2, bta-mir-2285n-3, bta-mir-2285n-4, bta-mir-2285o-3, bta-mir-2285o-4, bta-mir-2285m-3, bta-mir-2285m-4, bta-mir-2285o-5, bta-mir-2285m-5, bta-mir-2285n-5, bta-mir-2285n-6, bta-mir-2285n-7, bta-mir-2285k-2, bta-mir-6529a, bta-mir-2285k-3, bta-mir-2285k-4, bta-mir-2285k-5, bta-mir-2285q, bta-mir-2285r, bta-mir-2285s, bta-mir-2285t, bta-mir-2285b-2, bta-mir-2285v, hsa-mir-486-2, bta-mir-2285g-2, bta-mir-2285g-3, bta-mir-2285af-1, bta-mir-2285af-2, bta-mir-2285y, bta-mir-2285w, bta-mir-2285x, bta-mir-6529b, bta-mir-133c, bta-mir-2285z, bta-mir-2285u, bta-mir-2285aa, bta-mir-2285ab, bta-mir-2285ac, bta-mir-2285ad, bta-mir-2285ae, bta-mir-2285ag, bta-mir-2285ah, bta-mir-2285ai, bta-mir-2285aj, bta-mir-2285ak, bta-mir-2285al, bta-mir-2285am, bta-mir-2285ar, bta-mir-2285as-1, bta-mir-2285as-2, bta-mir-2285as-3, bta-mir-2285at-1, bta-mir-2285at-2, bta-mir-2285at-3, bta-mir-2285at-4, bta-mir-2285au, bta-mir-2285av, bta-mir-2285aw, bta-mir-2285ax-1, bta-mir-2285ax-2, bta-mir-2285ax-3, bta-mir-2285ay, bta-mir-2285az, bta-mir-2285an, bta-mir-2285ao-1, bta-mir-2285ao-2, bta-mir-2285ap, bta-mir-2285ao-3, bta-mir-2285aq-1, bta-mir-2285aq-2, bta-mir-2285ba-1, bta-mir-2285ba-2, bta-mir-2285bb, bta-mir-2285bc, bta-mir-2285bd, bta-mir-2285be, bta-mir-2285bf-1, bta-mir-2285bf-2, bta-mir-2285bf-3, bta-mir-2285bg, bta-mir-2285bh, bta-mir-2285bi-1, bta-mir-2285bi-2, bta-mir-2285bj-1, bta-mir-2285bj-2, bta-mir-2285bk, bta-mir-2285bl, bta-mir-2285bm, bta-mir-2285bn, bta-mir-2285bo, bta-mir-2285bp, bta-mir-2285bq, bta-mir-2285br, bta-mir-2285bs, bta-mir-2285bt, bta-mir-2285bu-1, bta-mir-2285bu-2, bta-mir-2285bv, bta-mir-2285bw, bta-mir-2285bx, bta-mir-2285by, bta-mir-2285bz, bta-mir-2285ca, bta-mir-2285cb, bta-mir-2285cc, bta-mir-2285cd, bta-mir-2285ce, bta-mir-2285cf, bta-mir-2285cg, bta-mir-2285ch, bta-mir-2285ci, bta-mir-2285cj, bta-mir-2285ck, bta-mir-2285cl, bta-mir-2285cm, bta-mir-2285cn, bta-mir-2285co, bta-mir-2285cp, bta-mir-2285cq, bta-mir-2285cr-1, bta-mir-2285cr-2, bta-mir-2285cs, bta-mir-2285ct, bta-mir-2285cu, bta-mir-2285cv-1, bta-mir-2285cv-2, bta-mir-2285cw-1, bta-mir-2285cw-2, bta-mir-2285cx, bta-mir-2285cy, bta-mir-2285cz, bta-mir-2285da, bta-mir-2285db, bta-mir-2285dc, bta-mir-2285dd, bta-mir-2285de, bta-mir-2285df, bta-mir-2285dg, bta-mir-2285dh, bta-mir-2285di, bta-mir-2285dj, bta-mir-2285dk, bta-mir-2285dl-1, bta-mir-2285dl-2, bta-mir-2285dm, hsa-mir-6529
In recent years, the value of circulating miRNAs as diagnostic biomarkers has been shown in relation to cancer (e. g. miR-21, miR-20, miR-221 [10, 11]), cardiovascular disease (miR-1, miR-133a [12]), liver disease (miR-122 [13]) and diabetes (miR-375 and miR-34 [14]), among many other human pathologies and physiological processes including pregnancy [15]. [score:5]
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[+] score: 5
The low abundance and late detection (all Cq > 32) of miR-1 contributed to large variation in readings even between technical replicates (Figure 4A, most CqSD > 0.4). [score:1]
A miRNA normally found at low levels in circulation is miR-1. This largely cardiac and skeletal muscle-specific miRNA may serve as a reliable biomarker of muscle injury precisely because of its normally low abundance in blood [31]. [score:1]
# 4427975: hsa-miR-1-3p (002222), hsa-miR-16-5p (000391), hsa-miR-125b-5p (000449), hsa-miR-223-3p (002295), hsa-miR-29b-3p (000413), ath-MIR156a (000333), ath-MIR166a (000347), and cel-miR-39 (000200); and ath-MIR167a (000348) under "Made to Order" Cat. [score:1]
miR-29b was associated with amplification at even higher Cq values than miR-1, with most replicates amplifying after Cq of 37 and with CqSD > 0.4 (Figure 4B). [score:1]
Figure 4. (A) miR-16 is detected reliably in plasma with Cq in the low 20s, while miR-1 is detected only in the 30s, with high variability. [score:1]
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[+] score: 4
In Texel sheep, the MSTN allele is characterized by a G vs A transition in the 3 [′]UTR that creates a target site for miR-1 and miR-206, which are highly expressed in skeletal muscle. [score:3]
Current data on the role of miRNAs in myogenesis has been obtained largely from studies on muscle-specific miR-1, miR-133 and miR-206. [score:1]
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[+] score: 4
In sirloin and heart, several muscle-specific miRNAs (myomiRs) were observed: including miR-1, essential for the development and homeostasis of smooth and skeletal muscle [27, 28], miR-378a-3p, involved in exercise -induced muscle hypertrophy [29], and miR-486-5p, which is also modulated by exercise and helps regulate the differentiation of myoblasts [30]. [score:3]
The muscle-specific miR-1 was prominent in sirloin and heart -based preparations while miR-206, another muscle-specific miRNA, was prevalent in both raw and cooked sirloin. [score:1]
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[+] score: 3
A G > A transition in the 3ʹUTR of the GDF8 gene created microRNA target sites for mir1 and mir206, consequently promoting the muscular hypertrophy phenotype in Texel sheep [31]. [score:3]
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27
[+] score: 1
Two miRNAs are encoded at the left hand end of the genome in the region between the terminal repeat and the 3′ end of ORF Ov2, these have been named ovhv2-miR-Ov2-1 and ovhv2-miR-Ov2-2 (ovhv2-miR-1 in Levy et al. 2012 [22]). [score:1]
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[+] score: 1
Our previous studies revealed that skeletal muscle-specific miRNAs, namely miR-1, miR-133a/b, miR-206, miR-208a/b, miR-496, and miR-499, were abundant in the muscles of JB cattle [4], whereas none of them was detected in the plasma profiles except for a modest miR-486 content [24]. [score:1]
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[+] score: 1
Other miRNAs from this paper: hsa-mir-1-2, hsa-mir-1-1, bta-mir-1-2
The isopeptide bond formed between eukaryotic ubiquitin and lysine residues is not the only way that conjugates can be generated; for example, the viral E3 ligase MIR1 can catalyse the formation of thiol-ester bonds between ubiquitin and cysteine residues on major histocompatibility complex I class proteins found on the surface of cytotoxic T lymphocytes (Cadwell & Coscoy, 2005). [score:1]
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