miRNA Search Results

sort by 5 publications mentioning ssc-mir-100 Open access articles that are associated with the species Sus scrofa and mention the gene name mir-100. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.
1	[+] score: 13 Other miRNAs from this paper: ssc-mir-106a, ssc-mir-125b-2, ssc-mir-23a, ssc-mir-26a, ssc-let-7i, ssc-mir-21, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-99b, ssc-mir-17, ssc-mir-133a-1, ssc-mir-30a, ssc-mir-206, ssc-mir-378-1, ssc-mir-133b, ssc-mir-30d, ssc-mir-10a, ssc-mir-99a, ssc-mir-345-1, ssc-mir-92a-2, ssc-mir-92a-1, ssc-mir-92b, ssc-mir-450b, ssc-mir-1306, ssc-mir-339-1, ssc-mir-19b-2, ssc-mir-19b-1, ssc-mir-129a, ssc-mir-505, ssc-mir-125b-1, ssc-mir-450c, ssc-mir-133a-2, ssc-mir-378-2, ssc-mir-218b, ssc-let-7d, ssc-mir-9-3, ssc-mir-29b-2, ssc-mir-137, ssc-mir-339-2, ssc-mir-345-2, ssc-mir-1249-1, ssc-mir-1249-2, ssc-mir-378b, ssc-mir-26b In this sense, many porcine miRNAs were described to be down-regulated in the infected samples, particularly in the in vitro infection, such as miR-125b-5p, miR-99b-5p, miR-100 and miR-2887, suggesting that viral mechanisms can affect host miRNA expression. [score:6] For instance, miR-100 has already been described to be down-regulated in human cytomegalovirus infection [57], showing that it could be associated to viral infection. [score:4] Looking at most abundant miRNAs (CN>100), we observed a clear predominance of those miRNAs over-expressed in mock-infected group (Table 4), such as miR-125b-5p, miR-99b-5p and miR-100. [score:3] [1 to 20 of 3 sentences]
2	[+] score: 10 Other miRNAs from this paper: ssc-mir-122, ssc-mir-148a, ssc-mir-15b, ssc-mir-184, ssc-mir-216-1, ssc-mir-24-1, ssc-mir-140, ssc-mir-27a, ssc-mir-21, ssc-mir-30c-2, ssc-mir-210, ssc-mir-221, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-133a-1, ssc-mir-30a, ssc-mir-143, ssc-mir-10a, ssc-mir-10b, ssc-mir-27b, ssc-mir-24-2, ssc-mir-193a, ssc-mir-192, ssc-mir-222, ssc-mir-574, ssc-mir-335, ssc-mir-129a, ssc-mir-133a-2, ssc-mir-4332, ssc-mir-652, ssc-mir-146a, ssc-mir-30c-1, ssc-mir-451, ssc-mir-129b, ssc-mir-1343, ssc-mir-216-2, ssc-mir-582 Eight DEMs, 4 down-regulated (miR-146a, miR-222, miR-574 and miR-652) and 4 up-regulated (miR-100, miR-133a, miR-216 and miR-582-5p), were randomly chosen for validation using RT-qPCR. [score:7] Among the 8 DEMs detected by deep sequencing, 4 were proved significant (p<0.05) by qPCR, one had a tendency to be significant (p = 0.06), yet 3 (miR-146a, miR-574 and miR-100) were not confirmed significant (Table 2). [score:1] For example, miR-100, which has an average RPM of 958, was detected, however with the hybridization signal much lower than the perfectly matching miRNAs of the similar abundance. [score:1] Among the 40 DEMs obtained by deep sequencing, 8 (miR-100, miR-140, miR-184, miR-193a-5p, miR-222, miR-4332-3p, miR-451, and miR-574) were detectable in microarray. [score:1] [1 to 20 of 4 sentences]
3	[+] score: 6 Other miRNAs from this paper: ssc-mir-140, ssc-let-7f-1, ssc-mir-21, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-17, ssc-mir-185, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-1, ssc-let-7a-1, ssc-mir-320, ssc-mir-423, ssc-mir-10a, ssc-mir-10b, ssc-mir-4339, ssc-let-7a-2, ssc-let-7f-2, ssc-mir-9-3 In another study, miR-100 and miR-101, both target rapamycin (PI3K/Atk/mTOR) pathway, are strongly downregulated by HCMV [35]. [score:6] [1 to 20 of 1 sentences]
4	[+] score: 4 Other miRNAs from this paper: ssc-mir-148a, ssc-mir-181b-2, ssc-mir-23a, ssc-mir-26a, ssc-mir-29b-1, ssc-mir-181c, ssc-mir-214, ssc-let-7c, ssc-let-7f-1, ssc-let-7i, ssc-mir-128-1, ssc-mir-21, ssc-mir-29c, ssc-mir-99b, ssc-mir-199b, ssc-mir-133a-1, ssc-mir-1, ssc-mir-181a-1, ssc-mir-30a, ssc-mir-206, ssc-let-7a-1, ssc-let-7e, ssc-let-7g, ssc-mir-378-1, ssc-mir-133b, ssc-mir-29a, ssc-mir-30d, ssc-mir-199a-2, ssc-mir-128-2, ssc-mir-320, ssc-mir-143, ssc-mir-10b, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181d, ssc-mir-196b-1, ssc-mir-542, ssc-mir-127, ssc-mir-369, ssc-mir-155, ssc-mir-133a-2, ssc-mir-126, ssc-mir-199a-1, ssc-mir-378-2, ssc-let-7a-2, ssc-let-7d, ssc-let-7f-2, ssc-mir-29b-2, ssc-mir-196b-2, ssc-mir-378b, ssc-mir-141 miR-100 regulates neovascularization by suppressing rapamycin in endothelial and vascular smooth muscle cells [44]. [score:4] [1 to 20 of 1 sentences]
5	[+] score: 3 Other miRNAs from this paper: ssc-mir-125b-2, ssc-mir-145, ssc-mir-23a, ssc-mir-24-1, ssc-mir-26a, ssc-mir-140, ssc-let-7c, ssc-let-7f-1, ssc-let-7i, ssc-mir-103-1, ssc-mir-21, ssc-mir-29c, ssc-let-7a-1, ssc-let-7e, ssc-let-7g, ssc-mir-30d, ssc-mir-199a-2, ssc-mir-423, ssc-mir-151, ssc-mir-10a, ssc-mir-10b, ssc-mir-486-1, ssc-mir-152, ssc-mir-103-2, ssc-mir-24-2, ssc-mir-23b, ssc-mir-99a, ssc-mir-125a, ssc-mir-92a-2, ssc-mir-92a-1, ssc-mir-192, ssc-mir-374a, ssc-mir-374b, ssc-mir-532, ssc-mir-19b-2, ssc-mir-19b-1, ssc-mir-324, ssc-mir-125b-1, ssc-mir-194b, ssc-mir-362, ssc-mir-126, ssc-mir-199a-1, ssc-let-7a-2, ssc-mir-486-2, ssc-let-7d, ssc-let-7f-2, ssc-mir-31, ssc-mir-194a, ssc-mir-551a, ssc-mir-1468, ssc-mir-200b In other cases, there is an agreement in all breeds for the most expressed isomiR except in one breed, like in Ssc-miR-21 and Ssc-miR-100 in Iberian breed, Ssc-miR-152 in Piétrain breed, Has-miR-200c-3p in Vietnamese breed or Hsa-let-7d-5p in Landrace breed. [score:3] [1 to 20 of 1 sentences]

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5 publications mentioning ssc-mir-100

Open access articles that are associated with the species Sus scrofa and mention the gene name mir-100. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

[+] score: 13

In this sense, many porcine miRNAs were described to be down-regulated in the infected samples, particularly in the in vitro infection, such as miR-125b-5p, miR-99b-5p, miR-100 and miR-2887, suggesting that viral mechanisms can affect host miRNA expression. [score:6]

For instance, miR-100 has already been described to be down-regulated in human cytomegalovirus infection [57], showing that it could be associated to viral infection. [score:4]

Looking at most abundant miRNAs (CN>100), we observed a clear predominance of those miRNAs over-expressed in mock-infected group (Table 4), such as miR-125b-5p, miR-99b-5p and miR-100. [score:3]

[1 to 20 of 3 sentences]

[+] score: 10

Eight DEMs, 4 down-regulated (miR-146a, miR-222, miR-574 and miR-652) and 4 up-regulated (miR-100, miR-133a, miR-216 and miR-582-5p), were randomly chosen for validation using RT-qPCR. [score:7]

Among the 8 DEMs detected by deep sequencing, 4 were proved significant (p<0.05) by qPCR, one had a tendency to be significant (p = 0.06), yet 3 (miR-146a, miR-574 and miR-100) were not confirmed significant (Table 2). [score:1]

For example, miR-100, which has an average RPM of 958, was detected, however with the hybridization signal much lower than the perfectly matching miRNAs of the similar abundance. [score:1]

Among the 40 DEMs obtained by deep sequencing, 8 (miR-100, miR-140, miR-184, miR-193a-5p, miR-222, miR-4332-3p, miR-451, and miR-574) were detectable in microarray. [score:1]

[1 to 20 of 4 sentences]

[+] score: 6

Other miRNAs from this paper: ssc-mir-140, ssc-let-7f-1, ssc-mir-21, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-17, ssc-mir-185, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-1, ssc-let-7a-1, ssc-mir-320, ssc-mir-423, ssc-mir-10a, ssc-mir-10b, ssc-mir-4339, ssc-let-7a-2, ssc-let-7f-2, ssc-mir-9-3

In another study, miR-100 and miR-101, both target rapamycin (PI3K/Atk/mTOR) pathway, are strongly downregulated by HCMV [35]. [score:6]

[1 to 20 of 1 sentences]

[+] score: 4

miR-100 regulates neovascularization by suppressing rapamycin in endothelial and vascular smooth muscle cells [44]. [score:4]

[1 to 20 of 1 sentences]

[+] score: 3

In other cases, there is an agreement in all breeds for the most expressed isomiR except in one breed, like in Ssc-miR-21 and Ssc-miR-100 in Iberian breed, Ssc-miR-152 in Piétrain breed, Has-miR-200c-3p in Vietnamese breed or Hsa-let-7d-5p in Landrace breed. [score:3]

[1 to 20 of 1 sentences]

miRBase

5 publications mentioning ssc-mir-100