sort by

4 publications mentioning ssc-mir-331

Open access articles that are associated with the species Sus scrofa and mention the gene name mir-331. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

1
[+] score: 70
These results may indicate that similar responses are happening in the host during Salmonella infection, that is, the down-regulation of miR-214 may allow for increased expression of SLC11A1 and LILR-like during Salmonella infection, and up-regulation of miR-331-3p expression may inhibit expression of VAV2. [score:15]
Similarly, the observed increased expression of miR-331-3p could favor the host immune response against Salmonella through the down-regulation of VAV2 to help block Salmonella uptake by suppressing of GTPases activities. [score:8]
Our study shows that VAV2 is significantly down-regulated after Salmonella infection in vivo and that it can be targeted by miR-331-3p in vitro. [score:6]
Further, the expression of miR-331-3p was up-regulated in LS (logFC 0.08), PS (logFC 0.74) and LS + PS (logFC 0.43) after Salmonella challenge (Fig. 5C). [score:6]
NC miRNA = negative control (scrambled) miRNA (c) Expression change of miR-331-3p after infection (d) Expression change of VAV2 after infection. [score:5]
Further, we identified two miRNAs, miR-214 and miR-331, occupying hub positions in the miRNA-mRNA regulatory network that could potentially target SLC11A1 and LILR-like, and VAV2, respectively. [score:4]
The expression levels of miR-214 (log2cpm = 2.25 across all samples) and miR-331-3p (log2cpm = 5.62 across all samples) are relatively high. [score:3]
This study identified differential expression of several miRNAs previously linked to immune response including miR-21, miR-146a and miR-125a 13, and reported several miRNAs not previously linked to immune response to Salmonella infection, such as miR-214, miR-30e-3p and miR-331. [score:3]
CCR7, for example, is involved in cytokine-cytokine receptor interaction and was identified as a potential target of let-7g, miR-15a, miR-98 and miR-331. [score:3]
Exactly 30 pmol miRNA mimics (miR-214/miR331-3p/negative control mimic) were separately transfected into the cell line with with 200 ng luciferase reporter containing target genes’ 3′UTR using 2 μl Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) and 24-well plates. [score:3]
Based on our observations noted above, we propose potential roles for miR-214 and miR-331-3p in the regulation of immune responses to Salmonella infection. [score:2]
Two Salmonella-regulated miRNAs of particular interest identified through this study are miR-214 and miR-331-3p. [score:2]
Regulation of VAV2 by miR-331-3p. [score:2]
VAV2 is involved in chemokine signaling and was predicted to be regulated by miR-30a, miR-331 and miR-339. [score:2]
Validations of miRNA-mRNA interactions using miR-214 - SLC11A1, miR-214 - LILR-like and miR-331-3p - VAV2 mimics. [score:1]
Several miRNA hub nodes were identified including miR-146a, miR-155, miR-214 and miR-331-3p (Fig. 3). [score:1]
We cloned the 3′ UTRs of SLC11A1, LILR-like and VAV2 into luciferase reporter plasmids to test miR-214 and miR-331-3p functions in vitro. [score:1]
The 3′ UTR of the pig VAV2 (ENSSSCG00000005743) RNA was predicted to contain one binding site complementary to the seed sequence of miR-331-3p (Fig. 5A). [score:1]
In contrast, miR-214 and miR-331-3p have not been previously linked to Salmonella infection. [score:1]
Validations of miRNA-mRNA interactions using miR-214 - SLC11A1, miR-214 - LILR-like and miR-331-3p - VAV2 mimics SLC11A1 and LILR-like have critical roles in immune responses to intracellular bacterial infection 45 46. [score:1]
[1 to 20 of 20 sentences]
2
[+] score: 9
Moreover, 13 miRNAs were differentially expressed: 8 were upregulated (ssc-miR-132, ssc-miR-146b, ssc-miR-215, ssc-miR-371, ssc-miR-27a, ssc-miR-331-3p, ssc-miR-432-5p and ssc-miR-199a/b-3p), while 5 were down-regulated after PRV infection (ssc-mir-10a-5p, ssc-mir-148-3p, ssc-mir-219a, ssc-mir-374b-3p and ssc-miR-532-5p) (Fig 7). [score:9]
[1 to 20 of 1 sentences]
3
[+] score: 7
Targets for miR-331-5p, 339-3p, and 935 were predicted using only 4 of 11 programs. [score:3]
For miR-331-5p, 339-3p, and 935 these parameters were loosened to targets predicted by 4 of 11 programs. [score:3]
ssc-miR-10a (JX185556); ssc-miR-29a (JX185557); ssc-miR-30b-5p (JX185558); ssc-miR-99a (JX185559); ssc-miR-148b (JX185560); ssc-miR-323 (JX185552); ssc-miR-331-5p (JX185553); ssc-miR-339-3p (JX185554); ssc-miR-374b-5p (JX185562); RNU1A (JN617883); AhR (KC012627), CCNG1 (KC012621); CDC42 (KC012622); DNMT3A (KC012620); FADD (KC012625); FOXO1 (KC012619); GPR37 (KC012626); IFI30 (KC012618); MMD (KC012628); USF2 (KC012623); USP46 (KC012624). [score:1]
[1 to 20 of 3 sentences]
4
[+] score: 5
Ssc-miR-331 was identified in the comparison groups in LW pig, and has been reported to be up-regulated during myogenic differentiation in human [61]. [score:4]
We identified 71, 96, 69, and 30 DE miRNAs (P-value <0.01) in the 60/120, 120/150, 150/180, and 180/210 dpn comparisons, respectively, in LW pig (Table 1 and S7 Table), among which four miRNAs (ssc-miR-127, ssc-miR-331-3p, ssc-miR-new-304, and ssc-miR-345-3p) were common (S3 Fig and S7 Table). [score:1]
[1 to 20 of 2 sentences]