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1 publications mentioning pgi-MIR6136b

Open access articles that are associated with the species Panax ginseng and mention the gene name MIR6136b. Click the [+] symbols to view sentences that include the gene name, or the word cloud on the right for a summary.

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[+] score: 34
miRNA family Target function Unigene ID (penalty score) MIR6135 Zinc finger CCCH-type antiviral protein FW1NBNE01BOG42(1.5) β-Cyanoalanine synthase PUT-183a-Panax_ginseng-3189(2.5) Mapkkk3 PUT-183a-Panax_ginseng-5059(3) Unknown FW1NBNE01CDUDE(1.5), Contig2012(2.5), PUT-183a-Panax_ginseng-2440(3) MIR6136 Unknown PUT-183a-Panax_ginseng-1090(3), PUT-183a-Panax_ginseng-11673(3) MIR6137 Armadillo/beta-catenin-like PUT-183a-Panax_ginseng-3440(2.5) Protein phosphatase PUT-183a-Panax_ginseng-4655(2.5) Repeat-containing protein PUT-183a-Panax_ginseng-8005(3) Unknown Contig872(3) MIR6138 Asparagine synthetase FW1NBNE01BSZXK(2) MIR6139 Serine/threonine-protein phosphatase FW1NBNE01BWTI7(2.5) ZIP transporter PUT-183a-Panax_ginseng-20083(2.5) 3-Hydroxybutyryl-CoA dehydratase Contig1795(3) UDP-sugar transporter PUT-183a-Panax_ginseng-9068(3) Unknown FW1NBNE01B23TH(2.5), FW1NBNE01AQA9Q(2.5) MIR6140 Phytanoyl-CoA dioxygenase-like protein PUT-183a-Panax_ginseng-6406(2.5) KH domain-containing protein PUT-183a-Panax_ginseng-11439(2.5) Casein kinase 2 subunit beta PUT-183a-Panax_ginseng-10659(2.5) Villin PUT-183a-Panax_ginseng-2502(3) Mitochondrial chaperonin-60 PUT-183a-Panax_ginseng-18641(3) DnaJ-like protein FW1NBNE01CCFHV(3) Phytochrome FW1NBNE01A44YJ(3) Unknown PUT-183a-Panax_ginseng-19392(3), PUT-183a-Panax_ginseng-13359(3) MIR6143 Homeobox-leucine zipper protein Contig703(2.5) Acyl-CoA dehydrogenase FW1NBNE01BR56P(3) Unknown Contig1700(3) Tissue-specific Expression of miRNAs in P. ginseng In order to further predict the functions of miRNAs in P. ginseng, we analyzed the expression of mature miRNAs with known precursor sequences, including conserved miR482a/b, miR2118 and miR4376 and all of non-conserved miRNAs, in leaves, stems, flowers, roots, and embryogenic calli using the poly(A) miRNA -based qRT-PCR method as described [28], [35], [100], [101]. [score:7]
miRNA family Target function Unigene ID (penalty score) MIR6135 Zinc finger CCCH-type antiviral protein FW1NBNE01BOG42(1.5) β-Cyanoalanine synthase PUT-183a-Panax_ginseng-3189(2.5) Mapkkk3 PUT-183a-Panax_ginseng-5059(3) Unknown FW1NBNE01CDUDE(1.5), Contig2012(2.5), PUT-183a-Panax_ginseng-2440(3) MIR6136 Unknown PUT-183a-Panax_ginseng-1090(3), PUT-183a-Panax_ginseng-11673(3) MIR6137 Armadillo/beta-catenin-like PUT-183a-Panax_ginseng-3440(2.5) Protein phosphatase PUT-183a-Panax_ginseng-4655(2.5) Repeat-containing protein PUT-183a-Panax_ginseng-8005(3) Unknown Contig872(3) MIR6138 Asparagine synthetase FW1NBNE01BSZXK(2) MIR6139 Serine/threonine-protein phosphatase FW1NBNE01BWTI7(2.5) ZIP transporter PUT-183a-Panax_ginseng-20083(2.5) 3-Hydroxybutyryl-CoA dehydratase Contig1795(3) UDP-sugar transporter PUT-183a-Panax_ginseng-9068(3) Unknown FW1NBNE01B23TH(2.5), FW1NBNE01AQA9Q(2.5) MIR6140 Phytanoyl-CoA dioxygenase-like protein PUT-183a-Panax_ginseng-6406(2.5) KH domain-containing protein PUT-183a-Panax_ginseng-11439(2.5) Casein kinase 2 subunit beta PUT-183a-Panax_ginseng-10659(2.5) Villin PUT-183a-Panax_ginseng-2502(3) Mitochondrial chaperonin-60 PUT-183a-Panax_ginseng-18641(3) DnaJ-like protein FW1NBNE01CCFHV(3) Phytochrome FW1NBNE01A44YJ(3) Unknown PUT-183a-Panax_ginseng-19392(3), PUT-183a-Panax_ginseng-13359(3) MIR6143 Homeobox-leucine zipper protein Contig703(2.5) Acyl-CoA dehydrogenase FW1NBNE01BR56P(3) Unknown Contig1700(3) In order to further predict the functions of miRNAs in P. ginseng, we analyzed the expression of mature miRNAs with known precursor sequences, including conserved miR482a/b, miR2118 and miR4376 and all of non-conserved miRNAs, in leaves, stems, flowers, roots, and embryogenic calli using the poly(A) miRNA -based qRT-PCR method as described [28], [35], [100], [101]. [score:5]
2, miR6136b, miR6140a, miR6140c, miR6140d and miR6142 showed low expression in embryogenic calli, whereas their expression was relatively high in stems and/or flowers. [score:5]
The expression of miR6136b, miR6139, miR6140d and miR6141 was fluctuated (Figure 6). [score:3]
The expression of miR6136b was altered in embryogenic calli treated with dehydration and heat, whereas both miR6136a. [score:3]
2 and miR6136b were mainly expressed in stems (Figure 5). [score:3]
In addition to miRNAs, we identified a miRNA* sequence for the non-conserved miRNA, miR6136b, which verified computational prediction of non-conserved miRNAs (Table 1). [score:1]
2 is similar to miR6136b, a miRNA generated from the antisense transcript of FW1NBNE01BEGNB (Figure 5). [score:1]
2), whereas their antisense transcripts produce miR6135i and miR6136b, respectively. [score:1]
2 and miR6136b. [score:1]
2 are generated from the same precursor FW1NBNE01BEGNB, whereas its antisense transcript produces miR6136b. [score:1]
2/j, miR6135i, miR6138, miR6140a and miR6143b-3p responded to heat treatment only, whereas the other five, including miR6136b, miR6135k, miR6139, miR6140d, and miR6141, responded to dehydration and heat. [score:1]
Similarly, PUT-183a-Panax_ginseng-5770 and FW1NBNE01BEGNB are precursors of miR6135d and two members of MIR6136 family (miR6136a. [score:1]
miR6135i and miR6136b were induced after heat treatment for 6 h. miR6135e. [score:1]
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