Stem-loop cbr-mir-50

Accession

MI0000504

Description

Caenorhabditis briggsae cbr-mir-50 precursor miRNA

Sequence

uuccacccaccggccgcUGAUAUGUCUGAUAUUCUUGGGUUaucugauaaugauuguuguaacucaaguauuagacguaucgacggccggcuggguuggaa
.(((((((((((((((.((((((((((((((..((((((((((..(((((...))))))))))))))))))))))))))))).))))))).)))).)))).

Structure

u    -    -       c              UU          cu     u 
 ucca ccca ccggccg UGAUAUGUCUGAUA  CUUGGGUUau  gauaa  
 |||| |||| ||||||| ||||||||||||||  ||||||||||  ||||| g
 aggu gggu ggccggc gcuaugcagauuau  gaacucaaug  uuguu  
a    u    c       a              --          --     a 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrI: 2597949-2598049 [+]

Mature cbr-miR-50

• Accession: MIMAT0000475
• Description: Caenorhabditis briggsae cbr-miR-50 mature miRNA
• Sequence: 18 - UGAUAUGUCUGAUAUUCUUGGGUU - 41
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862