Stem-loop cbr-mir-86

Accession

MI0000522

Description

Caenorhabditis briggsae cbr-mir-86 precursor miRNA

Literature search

1 open access papers mention cbr-mir-86
(2 sentences)

Sequence

cgagucaaugccguuUAAGUGAAUGCUUUGCCACAGUCuucgaucaugucacaugaagccugggcuuagauucacuuaggccggcguuccuugacuca
.(((((((((((((((((((((((.((..(((.(((.((((.............)))).))))))..))))))))))))).))))))....)))))).

Structure

c      ----      -           G  UU   A   U    gauca 
 gaguca    augccg uuUAAGUGAAU CU  GCC CAG Cuuc     u
 ||||||    |||||| ||||||||||| ||  ||| ||| ||||     g
 cucagu    ugcggc ggauucacuua ga  cgg guc gaag     u
a      uccu      c           -  uu   -   c    uacac 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIII: 6376870-6376967 [-]

Mature cbr-miR-86

• Accession: MIMAT0000491
• Description: Caenorhabditis briggsae cbr-miR-86 mature miRNA
• Sequence: 16 - UAAGUGAAUGCUUUGCCACAGUC - 38
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862