Stem-loop mmu-mir-96

Accession

MI0000583

Symbol

MGI: Mir96

Description

Mus musculus mmu-mir-96 precursor miRNA mir-96

Gene
family

RF00669; mir-96

Literature search

104 open access papers mention mmu-mir-96
(900 sentences)

Sequence

38572 reads, 214 reads per million, 95 experiments

ccaguaccaucugcuuggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcugugagCAAUCAUGUGUAGUGCCAAUAUgggaaaagcgggcugcugc
.(((((...(((((((..((.((.(((((((((.(((((..(((((((((......)))...))))))..)))))))))))))).)).))..))))))).))))).

Structure

c     cca       gg  g  U         G     UU      ---   uc 
 cagua   ucugcuu  cc au UUGGCACUA CACAU  UUGCUu   gug  u
 |||||   |||||||  || || ||||||||| |||||  ||||||   |||   
 gucgu   gggcgaa  gg UA AACCGUGAU GUGUA  AACgag   cgc  c
c     --c       aa  g  U         -     CU      ugu   cu 

Annotation confidence High

Genome context

chr6: 30169446-30169551 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-96

Mature mmu-miR-96-5p

• Accession: MIMAT0000541
• Description: Mus musculus mmu-miR-96-5p mature miRNA
• Sequence: 24 - UUUGGCACUAGCACAUUUUUGCU - 46
• Evidence: experimental ; cloned [1-3], Northern [1], Illumina [4,6]

Mature mmu-miR-96-3p

• Accession: MIMAT0017021
• Description: Mus musculus mmu-miR-96-3p mature miRNA
• Sequence: 66 - CAAUCAUGUGUAGUGCCAAUAU - 87
• Evidence: experimental ; 454 [5], Illumina [6]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


6. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275