Accession
MI0001034
Description
Oryza sativa
osa-MIR395j precursor miRNA
Gene family
MIPF0000016;
MIR395
Literature search
39 open access papers mention osa-MIR395j
(167 sentences)
(167 sentences)
Sequence
27
reads,
20
reads per million, 2 experiments
guguucccaagaguuccuugcaagcacuucacauagaacuucuguuacucucauguaacauugggaacuugagaagcuacuGUGAAGUGUUUGGGGGAACUCuagguggcac
(((((.((.((((((((((.((((((((((((((((..(((((.....(((((........))))).....)))))))).))))))))))))))))))))))).)).)))))
(((((.((.((((((((((.((((((((((((((((..(((((.....(((((........))))).....)))))))).))))))))))))))))))))))).)).)))))
Structure
c a g - aa guuac ugu
guguu cc agaguuccuu caagcacuucaca uag cuucu ucuca a
||||| || |||||||||| ||||||||||||| ||| ||||| |||||
cacgg gg uCUCAAGGGG GUUUGUGAAGUGu auc gaaga agggu a
u a - c -- guuca uac
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].
Genome context
Chr8: 3299479-3299590 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from osa-MIR395j
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR395j
| Accession | MIMAT0000965 |
| Description | Oryza sativa osa-miR395j mature miRNA |
| Sequence | 82 - GUGAAGUGUUUGGGGGAACUC - 102 |
| Evidence | not_experimental |
| Database links |
|
References
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