Accession
MI0001041
Description
Oryza sativa
osa-MIR395c precursor miRNA
Gene family
MIPF0000016;
MIR395
Literature search
39 open access papers mention osa-MIR395c
(167 sentences)
(167 sentences)
Sequence
8
reads,
10
reads per million, 2 experiments
guauuaucaagaguucucuuuaagcacuucauacgacaccauuauuuauaggguuguuGUGAAGUGUUUGGAGGAACUCucggugucau
....((((.(((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))).))))....
....((((.(((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))).))))....
Structure
guau a u - a auua
uauc agaguuc cuuuaagcacuucaua cgac cc u
|||| ||||||| |||||||||||||||| |||| ||
gugg uCUCAAG GAGGUUUGUGAAGUGu guug gg u
uacu c - u - auau
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].
Genome context
Chr4: 31805193-31805281 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from osa-MIR395c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR395c
| Accession | MIMAT0000972 |
| Description | Oryza sativa osa-miR395c mature miRNA |
| Sequence | 59 - GUGAAGUGUUUGGAGGAACUC - 79 |
| Evidence | not_experimental |
| Database links |
|
References
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