Stem-loop osa-MIR169n

Accession

MI0001129

Description

Oryza sativa osa-MIR169n precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

61 open access papers mention osa-MIR169n
(348 sentences)

Sequence

112 reads, 82 reads per million, 2 experiments

cucccuuuggUAGCCAAGAAUGACUUGCCUAuguguuuugccuuguguuggcucauccauccaucuaucagccguugcagauuugcaguggcagauuaaaggguuucagaaagaaauucuugugauggaugugcaauguggcugcaugggccggucuucuuggcuagccagaguggc
..((((((((((((((((((.((((.(((((((((....(((...(((((.(.(((((((((....(((.(((((((((....))))))))).)))..(((((((((.....)))))))))).)))))))).)))))).)))))))))))).))))))))))))).))))))).)).

Structure

cu  -       -         U    U         uuuu   uug     g u        - ---------------------aucu   a         g 
  cc cuuuggU AGCCAAGAA GACU GCCUAugug    gcc   uguug c cauccauc c                         auc gccguugca a
  || ||||||| ||||||||| |||| |||||||||    |||   ||||| | |||||||| |                         ||| |||||||||  
  gg gagaccg ucgguucuu cugg cggguacgu    cgg   guaac g guagguag g                         uag cggugacgu u
-c  u       a         -    c         ----   --u     - u        u uucuuaaagaaagacuuugggaaau   a         u 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

Chr11: 6085252-6085428 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR169n

Mature osa-miR169n

• Accession: MIMAT0001059
• Description: Oryza sativa osa-miR169n mature miRNA
• Sequence: 11 - UAGCCAAGAAUGACUUGCCUA - 31
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799