miRBase entry: cbr-mir-249

Stem-loop cbr-mir-249

Accession

MI0001407

Description

Caenorhabditis briggsae cbr-mir-249 precursor miRNA

Sequence

auuuguuauuuugugcgcccucaaugcuacuagcaacgcucaaaaaucacuguacgacaaaugacuauauuuugUCACAGGAUUUUUGAGUGUUGCuagucggagaagg
..................(((...(.(.((((((((((((((((((((.((((..((((((.........)))))))))))))))))))))))))))))).).)..)))

Structure

auuuguuauuuugugcgc   caa g u                    a    ac      uga 
                  ccu   u c acuagcaacgcucaaaaauc cugu  gacaaa   c
                  |||   | | |||||||||||||||||||| ||||  ||||||   u
                  gga   a g ugauCGUUGUGAGUUUUUAG GACA  CUguuu   a
------------------   -ag g c                    -    --      uau

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae. The mature sequence differs from the elegans sequence at 2 positions.

Genome context

chrX: 8056749-8056857 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-249

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-249

Accession	MIMAT0001305
Description	Caenorhabditis briggsae cbr-miR-249 mature miRNA
Sequence	75 - UCACAGGAUUUUUGAGUGUUGC - 96
Evidence	not_experimental

References

PubMed ID: 12672692
The microRNAs of Caenorhabditis elegans
"Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
"Genes Dev (2003) 17:991-1008