Stem-loop cbr-mir-355

Accession

MI0001422

Description

Caenorhabditis briggsae cbr-mir-355 precursor miRNA

Sequence

cuacugauuaugauuagucagcaaucggauggUUUGUUUUAGCCUGAGCUAUGuguuauugcauauucauagcuacuugcuaaaacauaccaaucgaguugacugacau
.........(((.(((((((((..((((.((((.(((((((((..((((((((.((........)).))))))).)..))))))))).)))).))))))))))))))))

Structure

cuacugauu   a         aa    a    U         CU -       u  uau 
         aug uuagucagc  ucgg uggU UGUUUUAGC  G AGCUAUG gu   u
         ||| |||||||||  |||| |||| |||||||||  | ||||||| ||    
         uac agucaguug  agcu acca acaaaaucg  c ucgauac ua   g
---------   -         --    a    u         uu a       u  uac 

Annotation confidence Not enough data

Comments

This miRNA is the predicted homologue of a verified C. elegans miRNA [1]. Its expression has not been verified in C. briggsae.

Genome context

chrII: 7347335-7347443 [-]

Mature cbr-miR-355

• Accession: MIMAT0001319
• Description: Caenorhabditis briggsae cbr-miR-355 mature miRNA
• Sequence: 33 - UUUGUUUUAGCCUGAGCUAUG - 53
• Evidence: not_experimental

References

1. PubMed ID: 15317971
   Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification
   "Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB"
   "RNA (2004) 10:1309-1322